UFO11249.5prime Sequence
1119 bp (1013 high quality bases) assembled on 2012-04-16
> UFO11249.5prime
CAGTCGACATGCATTCGAGGCTAAAATTCTTGGCATATTTACATTTTATA
TGCGCCAGCAGCATTTTCTGGCCGGAATTTAGTTCAGCCCAGCAGCAGCA
ACAGACGGTATCGTTAACCGAGAAAATACCATTAGGTGCAATCTTCGAAC
AGGGAACGGATGATGTGCAATCAGCCTTTAAATATGCAATGCTCAATCAC
AATCTGAATGTGAGCTCTCGACGCTTCGAATTGCAGGCGTATGTCGATGT
CATCAATACAGCGGATGCATTCAAATTATCCCGCCTGATTTGCAATCAAT
TCTCGCGCGGAGTCTACTCAATGCTGGGCGCCGTATCGCCGGACTCGTTT
GACACATTGCACTCGTACTCGAATACGTTCCAAATGCCATTTGTGACGCC
CTGGTTTCCCGAGAAGGTGCTTGCGCCGTCGTCGGGTCTCCTGGATTTCG
CTATCAGCATGCGTCCGGATTATCATCAGGCGATTATCGATACCATCCAG
TACTACGGCTGGCAGAGCATTATTTATCTCTACGACTCGCACGATGGCTT
ACTACGGCTGCAGCAAATCTATCAAGAACTGAAGCCCGGAAATGAAACGT
TCCGTGTGCAAATGGTGAAACGCATCGCCAACGTAACGATGGCCATTGAA
TTTTTGCACACGCTGGAGGATTTGGGTCGCTTTAGCAAAAAGCGCATCGT
GCTCGACTGCCCGGCGGAAATGGCCAAAGAGATCATCGTCCAGCATGTGC
GGGACATCAAGCTGGGCCGGCGCACCTATCATTACCTGCTCAGCGGACTG
GTCATGGACAACCACTGGCCCAGCGATGTGGTCGAGTTTGGGGCCATCAA
CATCACCGGCTTTCGGATTGTCGACTCTAATCGAGGGCGGTGCGTGATTT
CCACGACAGCCGGAAACGTTTGGAGCCGAGCGGCCAAGCCAAAGCCAGAA
CGCAGGGGCCCAACAGCTTGCGCATTCGGCCAAGGCTGCACTGATGTACG
ATGCGTTTTGGTGCTCGTCGAGCTTCAATCCGCATTTGCGCAAGAAGCCG
AATCAGTCCGGTTTCAATCATCTGCACGCCGCCAGCCACGGAAGGCAGTC
TTCTCATCGTCAGTCACTA
UFO11249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluRIA-RA | 3810 | CG8442-RA | 539..1638 | 9..1098 | 5055 | 98 | Plus |
| GluRIB-RD | 5439 | CG43743-RD | 865..1680 | 110..924 | 1355 | 78.1 | Plus |
| GluRIB-RC | 7186 | CG43743-RC | 865..1680 | 110..924 | 1355 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6631300..6631556 | 546..802 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 6626419..6626573 | 134..288 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 6631866..6632041 | 800..971 | 715 | 97.7 | Plus |
| 3L | 28110227 | 3L | 6628874..6629006 | 415..547 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 6624570..6624699 | 9..138 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 6626931..6627060 | 289..418 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9258098..9258228 | 289..419 | 370 | 85.5 | Plus |
| 3L | 28110227 | 3L | 9257402..9257556 | 134..288 | 340 | 81.3 | Plus |
| 3L | 28110227 | 3L | 9258823..9258955 | 415..547 | 260 | 79.7 | Plus |
| 3L | 28110227 | 3L | 6632140..6632257 | 978..1092 | 250 | 84.7 | Plus |
| 3L | 28110227 | 3L | 9266329..9266519 | 561..751 | 190 | 73.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:32:34 has no hits.
UFO11249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:33 Download gff for
UFO11249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glu-RI-RA | 528..1648 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:56 Download gff for
UFO11249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIA-RA | 530..1650 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:38 Download gff for
UFO11249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIA-RA | 530..1650 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:38 Download gff for
UFO11249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6624561..6624696 | 1..135 | 97 | -> | Plus |
| 3L | 6626421..6626573 | 136..288 | 100 | -> | Plus |
| 3L | 6626931..6627058 | 289..416 | 100 | -> | Plus |
| 3L | 6628876..6629005 | 417..546 | 100 | -> | Plus |
| 3L | 6631301..6631554 | 547..800 | 100 | -> | Plus |
| 3L | 6631867..6632052 | 801..978 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:56 Download gff for
UFO11249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6617661..6617796 | 1..135 | 97 | -> | Plus |
| arm_3L | 6619521..6619673 | 136..288 | 100 | -> | Plus |
| arm_3L | 6620031..6620158 | 289..416 | 100 | -> | Plus |
| arm_3L | 6621976..6622105 | 417..546 | 100 | -> | Plus |
| arm_3L | 6624401..6624654 | 547..800 | 100 | -> | Plus |
| arm_3L | 6624967..6625152 | 801..978 | 95 | -> | Plus |
