UFO11250.5prime Sequence
1080 bp (949 high quality bases) assembled on 2012-04-16
> UFO11250.5prime
CAGTCGACATGCATTGCCTGGTGATACTCGGATTTCTGCTGGGTAGCCTG
GTGGCATTCAGCTGGGCAGGAGTCACAACCCAGCCACCGCCACTCATACG
CACCCTAAGTGCCGGCGGAGACATAGGACCCCAGTTCGACGTGGGGAAGA
CCAAGGAACCCGAAGACGCGGAATTCTGGCACAACGTGGGCCTGAGGCAG
CTGGAGAAGACCATTAAGCAGGCGCAGCGCGTGAAGGAGGACTCCTACCA
GAAAAAGGCGCGGAATATCATCATCTTCATCGGAGACGGCATGGGAATAT
CCACGATCAGTGCTGGTCGCATCTACAAGGGGCAGTACCTGAAGCATGGT
TACGGCGAGGAGGAAACCCTCGTCTTCGACGATTTCCCAAACACTGGAAT
GGCCAAAACCTACAACGTGGACAAACAAGTGCCGGATTCGGCGGGCACTG
CCACTGCGATCTTCTCGGGTTCGAAAACCCATTACGGAGCCATTGGAATG
GACGCCACCCGCTCCAAGAAGAATGGGCAGCAAGGCAGGGTCCAGAGCGT
CATGGAGTGGGCCCAGAAGGAGGGCAAGCGCACCGGCGTGGTCACCACAA
CCAGGATCACGCACGCCACGCCCGCCGCCACCTACGCCCACATCTACGAC
CGGGACTGGGAGTGCGACACGGAAGTGCCCGCGGAATCGGTGGGCTTTCA
TGTCGATATTGCCCGTCAGTTGGTGGAGAATGCTCCGGGAAATCGGTTCA
ATGTGATCCTGGGCGGAGGAATGTCGCCCATGGGCATTCTGAATGCCTCC
GAGGTGAAGACTACTATTTTCCGAAGGACCCACGGAAACAATTTGCACCC
GCGGGTGATAACAGAACCTTCCTGCCGAGTGGCTGGCCCATCACGGCAAC
GACACAGTTCCTTCCAGCATTGGTACATTACCCGTAAGGATCTGCTTAAT
GTGAATGTCAGAGGTTGAACCCATTTGATGGGCTAGTTCCGAAACATTCC
ACTTACGTACTCATAGCCAGGAAGCGGAGAGCCTTTCCCTGCAGAATGAC
GGAAACGGCCTTAGAAATCTTGTAAGGGCG
UFO11250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aph-4-RA | 2153 | CG1462-RA | 235..1299 | 9..1072 | 4820 | 97.6 | Plus |
| Aph-4-RB | 2021 | CG1462-RB | 258..1167 | 164..1072 | 4045 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31050961..31051626 | 408..1072 | 2540 | 95.4 | Plus |
| 3R | 32079331 | 3R | 31050650..31050893 | 164..407 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 31049163..31049319 | 9..165 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:32:38 has no hits.
UFO11250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:33 Download gff for
UFO11250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aph-4-RA | 225..1303 | 1..1080 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:59 Download gff for
UFO11250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aph-4-RA | 228..1306 | 1..1080 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:39 Download gff for
UFO11250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aph-4-RA | 228..1306 | 1..1080 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:39 Download gff for
UFO11250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31049156..31049319 | 1..165 | 97 | -> | Plus |
| 3R | 31050652..31050893 | 166..407 | 100 | -> | Plus |
| 3R | 31050961..31051633 | 408..1080 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:59 Download gff for
UFO11250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26876374..26876615 | 166..407 | 100 | -> | Plus |
| arm_3R | 26874878..26875041 | 1..165 | 97 | -> | Plus |
| arm_3R | 26876683..26877355 | 408..1080 | 95 | | Plus |
