UFO11251.5prime Sequence
1124 bp (1034 high quality bases) assembled on 2012-04-16
> UFO11251.5prime
CAGTCGACATGCTCGCGTACACCCACGGCACATGGCTCCTGCTCCTGCTG
CTCCTTGTAGCAGGCGCATGCGCGCGGCCAGAAATAGCACACACACCGGA
TCCGGCTGCACTAGGCGAGGAGTCTACTCCACATGCACACGCACATCCAC
AGGCTCGCCATCATCACCATGCCCATCCCCATGCGCCGCTGAAGGAAGAT
GAGCAGGGAACAGCAATACCTGCTCCCATCCTAACAACTGATAACGTGGG
CATTGGGGAAACCACGACGGCATCAAGTTTGGCCGAGACGCAAAGCATGT
CCGATCCGGGATCTGTGACAGACACAACATCCACAAGCACATCGCACTCC
ACCTCGACCACGTCGACCACTTCGCCCGCACCCCTTCCGCCGGCTGCTCC
CGAACAGCCCGAGTATCTGAAGCACTGCTTCTATGCAGAAGAGCAGCTGT
GTGGCCACACCTTTGACGGACGAGCCGAAACCTCCGAGGGCCAGGGCTCG
ACAGTCGCGCAGTCGGAAGCCCAGAACCGAGGAGGACAGGGGAACAGCCA
GTGCCAGTGCAGGGAGCACCCGACGCGGCCAAACTCCTGGTACTGCTGCA
ACATATCGCAGCTGACGATGATCTCAAGCTGCAGCAACATATCCAAGTGG
ACCAACCTGCACGTGCGCAACATGACTGTGGAGGACATGGACCTCTCCAA
TCCAATATTCCGATCCCTGCAGTCGCTTGCCGTGACGGACGGCAATATCA
CTCGACTGGTGAACGCCTTTCCGCGGCTCTCGGCTCTTAAGTGCCTAAAC
ATATCAAACAACAACATCTCGGAGATCCACTCGAGGGCGGTGAAGGACGT
GCCCCATCTGGAGTCTTCGGCATGTCGAACAACAATCTCTCGCTGGTGCC
TCACCGAAACCAGAACAGAACATTACGCTGGATATCAGTGGCAACATGCG
CATGCTGTGCACCTCCGCTAAACGAGATAATATACACCGAATCTATATTT
CTGAACCGGAGCACTCCTACTGTCAGTATACGCCCACACACACCTGTTTT
CAGTCACGACAAGTGTCGGTGGAAGCACTTGAAACAGAAGCGGTGGTGTG
ACTAATGCGGTATCGGACTCGGCA
UFO11251.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hfw-RB | 3038 | CG3095-RB | 347..1457 | 5..1106 | 5100 | 98.1 | Plus |
| hfw-RA | 2540 | CG3095-RA | 347..1457 | 5..1106 | 5100 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1670816..1671729 | 27..938 | 4470 | 99.8 | Plus |
| X | 23542271 | X | 1671783..1671906 | 935..1055 | 340 | 90.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:32:41 has no hits.
UFO11251.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:34 Download gff for
UFO11251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hfw-RA | 320..1403 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:00 Download gff for
UFO11251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hfw-RA | 343..1426 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:42 Download gff for
UFO11251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hfw-RA | 343..1426 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:42 Download gff for
UFO11251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1669912..1669937 | 1..26 | 92 | -> | Plus |
| X | 1670816..1671729 | 27..938 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:00 Download gff for
UFO11251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1563945..1563970 | 1..26 | 92 | -> | Plus |
| arm_X | 1564849..1565762 | 27..938 | 99 | -> | Plus |
