UFO11253.5prime Sequence
1120 bp (997 high quality bases) assembled on 2012-04-16
> UFO11253.5prime
CAGTCGACATGTCGGGTAGGCGGGCCCAATCTCTGCCGGCGCACATGTTG
GAGCCAGCGAAGCCGCAACGCGGACGCTGTGTAGCTGCCATCTGCTTCTC
GTGGAAGGTGCTCACCTGCATTGTGTCCCATGTGCTGCTCGTGCTTCTCG
TGGTTTCCTATTGCGTGGGCGGTGCCTACCTCTTCCAGCATCTCGAACGA
CCCCACGAACTAGAGGTGAAGCGAGACATACAGAATCTTCGCGTTAATCT
CACGGAGAATATCTGGCTACTGTCCGACGACGCAGTGGTCCTAAGGGAAA
GCGATTGGATGGCCAATGTCAGCAAGCACCTGGCCAATTTTGAAAAGCAA
ATCCTTACGGCCATCAAGGCCGACGGCTGGGATGGCGACGAGGATCTGCG
CAAGTCCCAGTGGACCTTTGCCGGATCCCTGTTCTACTCGATTATTGTGA
TAACGACCATAGGCTATGGTCACATATCGCCGCGTACGGATTGGGGCAAG
GTGACAACGATTTTCTACGCCATTGTGGGCATTCCGCTGATGCTCATCTG
CTTGTCCAACATTGGCGATGTCATGGCCACATCATTTCGGTTTCTGTACT
GGAGAATATGCTGCTATGTGTGCACCCGCACGGCCAAACGTCCGAGGAAT
GCCCGATCCCGGCAGAGATCGATGCGCTCTCAGCGCCATGCCCGATCCCA
GCCGCCGCCCTCGTTCCGGCGCTCCATGAAGATGACCCAACGGTCTGGGA
ATGACTCGGGTCTGGGTCCTTCCATGGGTCATGCCTATTCAGATCCCGAC
CTGCGCACCATGGGCCGGGGCTACGATGACCGCGAGTTCGGACATCGGAG
CAGTGGAGGGCGGACGCATCGTCGTCAGCAGCAGCAGCAGCATTTGCATC
ACGATCCTCGCAGCGTCACACCATTTACGGAGATGGGTACGAACTCAGAC
CCTGAACAGATCCCACGCTACAGTAGCCGGCAAGACACGGGATCGGATGA
GGGAACGACCCACGGTAGAAAGGGAGCGCTACTCTCGATTCCACCTGTGA
TGCTGATCATTGAGACTTCGGTGACACTGCACTCTGCCAAAGACTGTCAG
TGTGCGATCGGTCGTACTGC
UFO11253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9194-RA | 2974 | CG9194-RA | 241..1356 | 8..1112 | 5060 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1239818..1240278 | 589..1044 | 1885 | 97.4 | Plus |
| 3L | 28110227 | 3L | 1236835..1237084 | 214..463 | 1250 | 100 | Plus |
| 3L | 28110227 | 3L | 1236570..1236781 | 8..219 | 1060 | 100 | Plus |
| 3L | 28110227 | 3L | 1239626..1239756 | 461..591 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:32:49 has no hits.
UFO11253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:35 Download gff for
UFO11253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9194-RA | 231..1359 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:05 Download gff for
UFO11253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9194-RA | 234..1362 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:44 Download gff for
UFO11253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9194-RA | 234..1362 | 1..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:44 Download gff for
UFO11253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1236563..1236777 | 1..215 | 98 | -> | Plus |
| 3L | 1236837..1237083 | 216..462 | 100 | -> | Plus |
| 3L | 1239628..1239754 | 463..589 | 100 | -> | Plus |
| 3L | 1239819..1240358 | 590..1120 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:05 Download gff for
UFO11253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1236563..1236777 | 1..215 | 98 | -> | Plus |
| arm_3L | 1236837..1237083 | 216..462 | 100 | -> | Plus |
| arm_3L | 1239628..1239754 | 463..589 | 100 | -> | Plus |
| arm_3L | 1239819..1240358 | 590..1120 | 94 | | Plus |
