UFO11254.5prime Sequence
1013 bp (993 high quality bases) assembled on 2012-04-16
> UFO11254.5prime
CAGTCGACATGCCGAGCTCACGACGTGCGATCCTGAGGCACATATTGTCG
GGCATTTGCACCAAGATGAATCGCACCAAGTCGGTGCCCACTGACGTCAT
GGAGACGCCGCTAAACCGATGCCTCAACACCTTCGACATCGCTCTATTGG
GCATTGGCCATATGGTTGGCGCTGGCATCTACGTGCTGACTGGAACTGTG
GCCAAGGAAATGGCCGGACCCGGGATCATATTATCCTTCATCCTGGCCGG
ATTTATTTCGATGCTGGCCGCCCTATGTTACGCGGAGTTCGGGACTCGAG
TGCCCAAGGCGGGATCGGCCTATGTGTACACCTACATCTCGATGGGTGAA
TTCTGGGCCTTCGTCATCGGCTGGAATATCCTGCTGGAGCATATGCTGGG
TGCAGCTTCGGTGGCCAGGGCCTGGAGTGGATACGTGGATTCAATGCTGG
GCGGTTGGATTGGGAACACAACGCTGGAGCTAACGGGTGGCATCCACGAG
CCCGGATTGGCCCAATACCCCGACGTCTTAGCCTTCCTGGTCTGCATTGT
TTACGCGGCTGCTCTGGCCGGAGGAGTAAAGGCCACGGCGGTGTTTAACA
GTCTCCTCACCCTGGTCAATATAGCCGTGATGGTGCTGGTCATCAGCGTG
GGATTCTGGTATGCGGATGGTAAGAATTGGTCCGAGGCTGAGGGTGGATT
TCTGCCCTACGGCGTTGGAGGAGTCATCGCCGGTGCAGCCACCTGTTTCT
ACGCCTTCGTGGGCTTCGATCCATAGCCACTTCCGGTGAGGAGGCCAAAA
ACCCATCGGTATCCATACCCGTGGCCACTGTGATCTCATTGTTCGTGTTG
ACAGTGGGCTACATCCTTGTCACGCCGCTCTGACCCTTATGATTCCCATC
AATGAGATCAATCCGGCTGCTCATTGCGGAGGCATTTGGGCATTGACCTC
TCCTGGGCCAGTACTTATCTCCACGAACCTCGTGGGAAATGACCACCACC
TTGTTGGAATCCT
UFO11254.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13248-RA | 2856 | CG13248-RA | 163..1176 | 9..1012 | 4700 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20408839..20409655 | 960..150 | 3760 | 98.8 | Minus |
| 3L | 28110227 | 3L | 20410262..20410404 | 151..9 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:32:53 has no hits.
UFO11254.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:36 Download gff for
UFO11254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13248-RA | 162..1179 | 1..1013 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:07 Download gff for
UFO11254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13248-RA | 159..1176 | 1..1013 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:45 Download gff for
UFO11254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13248-RA | 159..1176 | 1..1013 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:45 Download gff for
UFO11254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20408781..20409654 | 151..1013 | 97 | <- | Minus |
| 3L | 20410263..20410408 | 1..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:07 Download gff for
UFO11254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20401881..20402754 | 151..1013 | 97 | <- | Minus |
| arm_3L | 20403363..20403508 | 1..150 | 97 | | Minus |
