UFO11256.5prime Sequence
1038 bp (1034 high quality bases) assembled on 2012-04-16
> UFO11256.5prime
CAGTCGACATGGAAGCCGCATCACCGAGGGAAACCCAGAAGAACCCGAAT
CCGATCGAGGCGCTGAGCAAAGATGAAATCATCAGCAAATACAAAGGCCT
GCTCAACATCGCTAAAAAGGCGAAACAGGCAAAAGATGAACTCACCGAGG
AAAATCACCGACTCAAGGATGCCCTTAAACGGGCGGCGGAGAAGCAGAGC
AGCCTGCCAGCCATGCAGGAAATGGTCCAGGACTTCACCGATAAGAACCT
CATCCTCACCGAGGAAGTGAATAATCTGAAACGAAAGACCAAAGAGGATG
CCGATCGACTGACGCAATTCGAGATCGAGAACGAGAGCCTAAAGCGCCAA
CTTGGGCGACTGAGTGATGAAAACGATGCCCTCCTTGCCAATGTGGATCG
CATGGAAAAGGCTATGCAACAGGTCAATGCTCTGGGTAACGAGCAGCGCA
AGAATCTGGAACTTTTGGAAGTGGACATTGCCAAAATTAAGGAAGCGGAG
GCGGAAAACGCTAGTCTTCGCCAGCAAGTCGCCACGATGGAAGAAGAGTC
GAGTGTGCTGCAGCAAAAGTACCAAAACATCAAGGAACTTAACTCTGAGC
AACGCAAGAAGTTTAATTCTCTAAAGGACCGCTTCATTGATGTACACCGC
AAGTTGAAGAACCTCAAGGAGTGCAAGTGCGTGCTGCTGGAAACGCAGCA
CGAGTACGCCGCATCCGTTTCCAAATGGCAGGTGGAGATTATCAAAGCTT
CGCAACTGTTGTGCGCAAAGATGGCATCCCTGCAGGCCGAGAATGAAAAA
CTGAAGCTGAACAATGGAAAGTCAGACAATAATCCTCAAACAATTGACAC
TGGAATTGACCGCAAGCGCTTACTGCAAAGAGTTCAGAAATGGATCGGCT
AGCCAAAATAGTGAGCAGAGCAAAAGAACCAAGGAGCAATTTGGATGTGA
GTACTACTTAAGAGATACCGCTCTCGAGAGCTTGCAGTCATTATAAGCAG
CACAAAGAATTGACAAGGAACAATTGATAGTGTACCGA
UFO11256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC185-RB | 4040 | CG3532-RB | 158..1201 | 7..1038 | 4860 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12011182..12012084 | 138..1029 | 3920 | 98.4 | Plus |
| 3R | 32079331 | 3R | 12011020..12011122 | 36..138 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:33:00 has no hits.
UFO11256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:37 Download gff for
UFO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3532-RB | 142..1190 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:11 Download gff for
UFO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3532-RB | 152..1200 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:48 Download gff for
UFO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GCC185-RB | 152..1200 | 1..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:48 Download gff for
UFO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12010923..12010960 | 1..38 | 92 | -> | Plus |
| 3R | 12011023..12011122 | 39..138 | 100 | -> | Plus |
| 3R | 12011183..12012093 | 139..1037 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:11 Download gff for
UFO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7836645..7836682 | 1..38 | 92 | -> | Plus |
| arm_3R | 7836745..7836844 | 39..138 | 100 | -> | Plus |
| arm_3R | 7836905..7837815 | 139..1037 | 98 | | Plus |
