UFO11258.5prime Sequence
978 bp (968 high quality bases) assembled on 2012-04-16
> UFO11258.5prime
CAGTCGACATGGAGGAAGTTCTCGAGACGATGCAGCTGGAGAACATGCAC
TGCGATGTGTGCGAGGGTACCACCTTCCAGGAGCGCGAGGGATTCTACTA
CTGCGTAGAGTGTGGCACACAGAAGGATCAGATTCGTGCAGTGGACATTA
CCGCCGAGGATAACTTTGATGACACGGCAGCAGGCCGATATACAGCCAGG
ACGATCCGACAGAAGAAGGATACGGAGAAGGAGGATGAGGACGATATCAC
CTCGTGGGAATTCTACAACTACGTGCTGCGCGGCTTCCTCCAGGAGCTGC
TCAACATGGGCGCCAAGCCGGAGCTCAAACTGATGACCCTGCAAGTGTGG
GCGGCTTACTTGGACAGCATGGAGGTGGCCTTCAGCAAGAGCAACAAGAC
GGGACTGCCTAAACTGAATGTGCGGGCGCTGCCCATAGATGCCCGCATCA
TCTACAACCATAAGACATTCAAGAAAGGCAAAAAGGGCAAGAAGAGCACT
CTAACGGGTGACCCAAATGACGAGCGCGCCAAGTTCAGATTGTGGAACAG
AACTAAGCGCAATCTAGACGCCTCCGGCTACCGCTCGCACGGAGGAGCTT
CAGAGTCCGAAGGGGAGCAGAGTCTCCACCTGCAATGGTCAATGCGTGCA
CGCAAGTCCTTGAAGCGCCATATGCCGCTGAAGCACCTGGACAAGCATAG
CCGCGACAGCAAGGGTAGTATGTCGTGCCACAGCTTGAGACCGAGGGTCA
AGCAGCTCCACAATTTTGATCGTAACATCTACTGCCTGAATATTATCAAG
TTGTATGTGGTGCTGGGCATAGCCCTTAATATGGTGGAGGATGATATACA
GCTATCGGACTTGCTGCGCTTCATTGATGAGAGCACTTGACCAGCCGTTG
CATGCTTAACTATCTGCCCGGAAATGTGGGCGGCCAAGGGCAAGGCACTG
CTCCAATATTATGGAAGCTCACCAAAAT
UFO11258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAF1B-RC | 3399 | CG6241-RC | 114..1081 | 9..978 | 4665 | 99 | Plus |
| TAF1B-RA | 2941 | CG6241-RA | 114..1081 | 9..978 | 4665 | 99 | Plus |
| TAF1B-RB | 3046 | CG6241-RB | 114..662 | 9..557 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10143644..10144071 | 436..9 | 2140 | 100 | Minus |
| 3R | 32079331 | 3R | 10142539..10142936 | 953..556 | 1850 | 98.7 | Minus |
| 3R | 32079331 | 3R | 10143468..10143588 | 557..437 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 10143363..10143438 | 557..482 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:32:22 has no hits.
UFO11258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:30 Download gff for
UFO11258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6241-RA | 104..1071 | 9..978 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:50 Download gff for
UFO11258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6241-RA | 114..1081 | 9..978 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:31 Download gff for
UFO11258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TAF1B-RA | 114..1081 | 9..978 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:31 Download gff for
UFO11258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10142516..10142934 | 558..978 | 97 | <- | Minus |
| 3R | 10143468..10143588 | 437..557 | 100 | <- | Minus |
| 3R | 10143644..10144071 | 9..436 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:50 Download gff for
UFO11258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5969190..5969310 | 437..557 | 100 | <- | Minus |
| arm_3R | 5968238..5968656 | 558..978 | 97 | <- | Minus |
| arm_3R | 5969366..5969793 | 9..436 | 100 | | Minus |
