UFO11260.5prime Sequence
895 bp (895 high quality bases) assembled on 2012-04-16
> UFO11260.5prime
CAGTCGACATGGCTCAACCATCGCAATCGGGAGCCGCGCAGGCGCTCAAC
GGCCAGCATCCGGAGTTGGCCTTCGCGGATGCGGACACGGACGGAGATGA
GCGACTGGAGGAGCATGGGCAGGAGCAGGAGCAGCTCCAGCTACTGGGTG
CCATGCCCAGGAAGCAATCTCTCAGCGAGCGACGCAATGTGGATCTACCG
CATTTGAAGATGGTCAACGAAAAGGAGCCGGAGTCGGCGACGCCGTCGCC
GGAGGCCTTTGCACCGGGACTCCGACGCAATTCGATATCCATGCCCTCGG
GCATTAATGCCCTGGATCTGGAGGCACTGCGTCTGCGACATCAGATGCAG
CCGCAAGATGCGCTGCACGAGGAGATTATAGCCGACGATGCGACCTCCAG
CCTGGGCACACCGGCCACTCCGGATACGCCGGGCACTACGGCGCCGACGA
CAACGGCCAATACGCCGGATAAGGCCATCAATTTCGCCAACGATGACAGC
GATGACGAGTTCGGGAACGCCAGAAGACCAGTTCATCGAGATCGTTTTCG
GAGCCGGAGACGCGCATCGATTGCTCCTCTGCCCGCCCTGCGCTTGAACA
GCAAGGAGATGTTGGCCAGCGACTTCGATAGCCACAGCCTGGCCTCCAAC
CAGGCCTCCATCACCAGTGTCAACTCCCTGGCCAGTTTATTGCGCGAGAA
GATGCAGGCTTTTCCGCAGCTGATAAGAAAGAAGAAGCGCGAGACGAAGA
CTACAAAATCAAGATATTCGTCATCATCATGTTTTTCATCATCATATTTC
TGATCGGCTATGCCTATGTGGCCTACCACCAGCAGGTGCTCACGCGTAGC
TACTTCCAGAAGATCAAGTTCAATTCGCACGACCGCATCTTTCGC
UFO11260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33080-RA | 3190 | CG33080-RA | 65..952 | 9..895 | 4415 | 99.9 | Plus |
| CG33080-RC | 3084 | CG33080-RC | 328..846 | 378..895 | 2570 | 99.8 | Plus |
| CG33080-RD | 2762 | CG33080-RD | 167..524 | 539..895 | 1765 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5717346..5717714 | 377..9 | 1845 | 100 | Minus |
| X | 23542271 | X | 5711634..5711804 | 708..538 | 855 | 100 | Minus |
| X | 23542271 | X | 5714652..5714812 | 538..378 | 805 | 100 | Minus |
| X | 23542271 | X | 5710881..5710974 | 895..802 | 470 | 100 | Minus |
| X | 23542271 | X | 5711477..5711575 | 802..705 | 445 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:32:29 has no hits.
UFO11260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:32 Download gff for
UFO11260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33080-RA | 58..952 | 1..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:55 Download gff for
UFO11260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33080-RA | 58..952 | 1..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:35 Download gff for
UFO11260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33080-RA | 58..952 | 1..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:35 Download gff for
UFO11260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5714652..5714812 | 378..538 | 100 | <- | Minus |
| X | 5717346..5717721 | 1..377 | 99 | | Minus |
| X | 5711635..5711803 | 539..707 | 100 | <- | Minus |
| X | 5710881..5710973 | 803..895 | 100 | <- | Minus |
| X | 5711477..5711572 | 708..802 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:55 Download gff for
UFO11260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5608685..5608845 | 378..538 | 100 | <- | Minus |
| arm_X | 5605668..5605836 | 539..707 | 100 | <- | Minus |
| arm_X | 5604914..5605006 | 803..895 | 100 | <- | Minus |
| arm_X | 5605510..5605605 | 708..802 | 98 | <- | Minus |
| arm_X | 5611379..5611754 | 1..377 | 99 | | Minus |
