UFO11261.5prime Sequence
1124 bp (1019 high quality bases) assembled on 2012-04-16
> UFO11261.5prime
CAGTCGACATGGCGCAGCGGCTTCATCTAGCGCTGGTCGGTGTGGTGCTC
CTAAACGCGACCGCCTCCTTCGCCTGGAAGCCCATCGTTGGCGGCGGCAG
CGGGATTAGCGGCGGCACTGCCGCCTACAGCCTCAAGCAATCGCATCCAG
GGGCGGCGAGCAGTAGCCATGAAATATCCACCAGCTTCTCGCAGTTCGGC
GGCGACAAGGAGACCACCGAAGTCGAGGACGAGCTCTTGCTGGGTCGCGC
TGCCATTGTGAACGGCGTCGATTCCAGTGCAGCGGTGTCCCATCCAATCA
GCTTTGCTGACCACTTGGAGGACCAGTACGAGTCGTACAGCATCGAGGAC
GAGGCGCCCAAAGAGCCGCTGGCCTTCCCGCGGTCTCCAGTGTACGGCTC
CGATCGCTGCAGCGTCAAGAAGTTCGCCTTCAATCAGGACGGCGAGGTGG
AGTACGGCAATCCGATGCCGGAACTGGACCAGTTTACTATCTGCTTTTGG
ATGCGATTCACTAACCACAGCGGCGACCACGTCCTCTTGACCTACGAGGC
TGGAAAGGAACCACGCGAGGTGCAAATCTGGGTCGCAAATGCGCAGAATT
CCAGTTTCCTTTCGATGGCCATAAAAGGTCAGCAAATGTACAGATTGAAC
TACCCGTTGAAAATGCGCCAGTGGCATCACATGTGCAGCTCGTGGAATGG
CAAGACGGGCGAGTGGCAGGCCTGGCTGAAGGCAGAACGCATTGGGCGTG
GTTTCCACAACTCGTTGGTGGGACATAAAATCCCAGCGAATGGCAAGCTG
CGCTCCGGCGGCAGTTCGGTCACCGGCGAGGTGAGCCACGGCCTCCACTT
CGAGATGACGCTCGTCCAGGTCTATCGGGTGGCCGCTCAGTGCAAGCAAG
GCGCATCGCGACCACAAGCACCACCATGTCCCCACTTTGATCACGAGGGC
CAGGAGGTCTCCAGCACCACTCGTGCCCACCCTCGAATTAATCGTCTCAA
CCCATGCACACGCTGCTCGCAGGTGACAGAATCCGACCCGGGTGCGCATC
ACTAGCATCCGCGGCGAACTGCAGTGTGCTCCCGCTCCTGGCGGGCCGAC
TCGACGGATCGCCAGCAGCATCAC
UFO11261.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| b6-RA | 2139 | CG3100-RA | 150..1252 | 5..1098 | 5045 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1686773..1687317 | 5..549 | 2710 | 99.8 | Plus |
| X | 23542271 | X | 1688901..1689115 | 764..978 | 965 | 98.6 | Plus |
| X | 23542271 | X | 1688647..1688769 | 642..764 | 615 | 100 | Plus |
| X | 23542271 | X | 1688480..1688574 | 549..643 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:33:18 has no hits.
UFO11261.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:40 Download gff for
UFO11261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b6-RA | 144..1264 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:22 Download gff for
UFO11261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b6-RA | 146..1266 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:56 Download gff for
UFO11261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| b6-RA | 146..1266 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:56 Download gff for
UFO11261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1686769..1687317 | 1..549 | 99 | -> | Plus |
| X | 1688481..1688574 | 550..643 | 100 | -> | Plus |
| X | 1688649..1688769 | 644..764 | 100 | -> | Plus |
| X | 1688902..1689127 | 765..986 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:22 Download gff for
UFO11261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1580802..1581350 | 1..549 | 99 | -> | Plus |
| arm_X | 1582514..1582607 | 550..643 | 100 | -> | Plus |
| arm_X | 1582682..1582802 | 644..764 | 100 | -> | Plus |
| arm_X | 1582935..1583160 | 765..986 | 96 | -> | Plus |
