UFO11262.5prime Sequence
1150 bp (1039 high quality bases) assembled on 2012-04-16
> UFO11262.5prime
CAGTCGACATGCCTTACCCTTTATATCCCGCCCATAGCCAAGTAATGTCG
GAAACGTCAAGCGTCAACGTGGATGCGGACCGAGATTGCAGAAGGATTGA
GGGCCTCCGACAGCGCTCACAACGCCTTGCTGCCCGCCTCCAGCAGATGC
AGAGGGAAATGGAGTCTAATGCATCCAGCAAAGACCTATCGGCCAACAAT
GCCGTTATTCCGCTGCAGCCACTAATGCGCTGGGCGGAACCACGGCCACA
TCCCAACCAATCCCAACCATCTGCTCGGAGCAACAGCAGGCAGGCCATTC
CTTACGGTGTGCCAGTATCCACGCCAGCGCCGGTAGCTATGCAATTGCCC
TACCACGTAGCATTCGCCTCCTACCAGGCGACCATGCAGATTCCCTGCCT
TCAGCCACTTTCGCATTTGCACGTCGTGTCTAGTCCCAGCCATCGGTTAA
TAGCGAAAAAGAAGTCGAAGCGGGCTCTTCGAAATGAGGTGGAAGCTCTT
CAGGATATGGTCAAACATCTTTCACACCTCTCCCCAGATGTTAACGCGTA
TGCCTGCCAGCTGATACGTAAAAACGAGATCCTTTCTCAGCTCGAGTGGA
GTCAGACCAGGTCAGAAGCACATCCGCAACAGGTTGGTTACCAGGGGCGG
CATCGCCACGATTCTGAGGTCTCTGCTACAAACAATGGAAGTCATGTACA
GCAGCAACCGAAACTAGGACGAAGGCAACGCAATAGCAAGAAAAACGATG
GATCCGGTAGCAATGGGACCCAATCGCAAAAAACCGAACTAGAGGCCATG
CGGTCGTACATAAACAAGATTGTCCAACGTCACGTGGGTATGGATCACCA
GTTGTCGGAAGACTTGATTTTCAAAGGTAACTTCTCCGACCTGGAAGCGC
ATGCGCAGAGACTAGTTGCGGCGGGTTATGGGCGCATTGTAGAAGAGGAA
ATCCGGGTTACCGCAGAACAACAGACAGGCTTTTATATCATGTCCACTGA
TCGAGAAGCACTCGAACGAGATGGCATCGTGCCTCTTGCCAGGGCTAGGC
GCTATGCCTCGATGGGTGACAAGTACGTGCATTCTGCTAACCCTGGGGGC
CTCAGGTAGTCAAGACGCTGAACCTCGGTTGGGTGAATTCTCTGGTGGGG
UFO11262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16940-RC | 3546 | CG16940-RC | 42..1190 | 9..1149 | 5240 | 97.9 | Plus |
| CG16940-RA | 3605 | CG16940-RA | 136..1249 | 44..1149 | 5065 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 212844..213888 | 44..1084 | 4840 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:33:22 has no hits.
UFO11262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:41 Download gff for
UFO11262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-RC | 42..1190 | 9..1150 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:25 Download gff for
UFO11262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-RC | 42..1190 | 9..1150 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:59 Download gff for
UFO11262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-RC | 42..1190 | 9..1150 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:59 Download gff for
UFO11262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 212750..212784 | 9..43 | 100 | -> | Plus |
| 3L | 212844..213957 | 44..1150 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:25 Download gff for
UFO11262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 212750..212784 | 9..43 | 100 | -> | Plus |
| arm_3L | 212844..213957 | 44..1150 | 97 | | Plus |
