UFO11266.5prime Sequence
1156 bp (1054 high quality bases) assembled on 2012-04-16
> UFO11266.5prime
CAGTCGACATGTTGAATGGACAGATTGCACACAGTTATTTGGAGAACTCG
TGCACGCTGATCATACCCCGCCCGCCTGTCCTGAATCAGTCCTCAAAGTC
GGCCCAGCCAGCAGCAGCAGCTGCTGCTTCTTCTTCCGCTGGTGAGGAGT
TTGGTCAGGAAGCGGGGTCGGGGTTGGCGGAAGCGGAGGCGTTGCATGTG
GATCGCATAAGAAACTGCGATATATTCGTTGACGCGCACGATCTTTATTT
CTACGCAGATGTTAAGCTGTACAAATTCCACAGCCGTCGCACCTTCGACT
TGCGAGAGCTGAAGACGCTGTTGATAAAGTTCAACACGACAGAGAATCAC
TACCAAATTTGCCTGCGCTGTCTGCCCCTAACAGCGGGTGCCCAGGAAGG
ACCCGGTGGAGAAAGAGGCGGAGGCGGTGGTACGGGGGATGCAGCCAAGC
AGTGGAATAGTCGCAAAGAGTACATAGCCGCATTCCTGCACCTACCCACA
CTGAGTGCCAATTTGCCGGACAAGCAGCCTCTGGTGCAGGAATGGAAACT
CAAACGAATCACCGATCAGTGCCAATTGCAGCTCGACGACCACGAGCGCA
CCTACAAGCTGACCAACAATTTTGGGTACGGCTATGCTAGCGAATACAGC
GGACCGCTAGACCTGAGTGAGTTGGACAGAGCCACGTGCCGCGTGTCGGA
GCCACATCGCATGAGCCCCATCCAAAGGCGGCAAGAGCGCGTGGTCGATG
AGATGAAGCGCTTTTCCCGCGAGCAGTACAAAATAAATTTTGTGGAGCTA
CAGGTTCCGTCCGGTCACCAGAATCCTTTACGCTACAAACCGAAAATCTA
CGAGACTTCCATGACCCAGGAACAAGCGCATCTGCTGCACACATCAGCCG
ATGCAGACACGGGAGCAGCAGCCGTGCGACGTTTTTCGGCAAACGAGATC
GATGCGGGCTGATAAGCATTCTGTTGCCATATGCTATGATGTGCGACGAC
GACAATGAGCCGACGTGTGAATCGGCTGACGCGAAGCATACTGGTGCCGC
TTTATGCTACTTTGAACAATTCGAACAACTATCGGACGTACTGTTGCTTT
CTGCGGAAATGATACCTACCGCGTACCGTATCAGTGGCCGCCAGGTTACG
GGAAGC
UFO11266.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10055-RA | 2422 | CG10055-RA | 103..1228 | 9..1120 | 5115 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7185814..7186214 | 671..271 | 1990 | 99.8 | Minus |
| 3R | 32079331 | 3R | 7185335..7185759 | 1085..670 | 1510 | 95.8 | Minus |
| 3R | 32079331 | 3R | 7186306..7186571 | 274..9 | 1315 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:33:37 has no hits.
UFO11266.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:44 Download gff for
UFO11266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10055-RA | 78..1200 | 3..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:34 Download gff for
UFO11266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10055-RA | 98..1220 | 3..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:05 Download gff for
UFO11266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10055-RA | 98..1220 | 3..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:05 Download gff for
UFO11266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7185303..7185757 | 672..1113 | 95 | <- | Minus |
| 3R | 7185814..7186210 | 275..671 | 100 | <- | Minus |
| 3R | 7186306..7186576 | 3..274 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:34 Download gff for
UFO11266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3011025..3011479 | 672..1113 | 95 | <- | Minus |
| arm_3R | 3011536..3011932 | 275..671 | 100 | <- | Minus |
| arm_3R | 3012028..3012298 | 3..274 | 98 | | Minus |
