UFO11268.5prime Sequence
1138 bp (1031 high quality bases) assembled on 2012-04-16
> UFO11268.5prime
CAGTCGACATGACCGAGAAGGATACCGTCTCGATGGCTACCGTGCAAATG
AAGCCCGACTATGCGGCTAGCGAGGTCTACAGCACCGCCAGCGAACCGCC
ACCGATGGGATTTTTTAACTTTAATCATCAGGCCTACAAGCGCCAGGCGA
ATTCGGTGAAAATCGCCAAGATCACCGCCTTCACCATCATCGTGTCAGCC
TTCATCCTGGGATCCTTCATCCTGGCCTCCTCCTACCTGCAGGCCAAGGC
CTCGTGCGATCAGGTCCAGGCCCTCGACTCGGTGCTGGAAAAGGAGCTAA
TGCTTGAGACTTTGCAGCAGGTGGGCAAGGAACTTCCCCGTGCTGAACCC
CTGCTGGGAGGAGCTGCTGGAGCTGCCGATGACTCCGAACTGCAGAGCTT
GGAGCCGGAAAGTCGTAAGACTGAAGCCACCCAGGATGCCGAGGAGCACC
CCGACAAGGACAACTCCTACTCCGACAGCGATGAGACCGATGAGCTGCAG
AAGTTCCCCGGCAAGATGCCACTCGAGCTGGACTTGAGTGACCTGGCTGC
CGCCATTCTGCGCAACAACAAGAAATCCCGCATGAACTGTGTGGTGGAGC
GCAAGCACGCCGAGGAGATTGTCGACTCGCCCTCGAAGACGGTAGCCCTG
CCCTTCGGAGTCAACCTGACCACGGATCCCAAGAAGGCACGCATCACCGG
CGAGCGGATCTCGATCTTCTGCGACGGCGGCGACGACAAGGATAAAGAGG
AGAAGGAGGCCAAGCGCCAGCGGGAGCAGGAGGAGGAGGACTCCGATGAG
GATGCCGAGCCGCTGAGGCCCATGTTCATTCCCTTCCAGCGAGTGCCCAT
TCCCTTCGGACGCATTCCCGACCAGATGCCGCTGACCCATATGCCCCAGA
GGATGATGCCACCAGCCATGCAGATGCAACAGCAATTGCCCCAGCAGCAA
CAGCAGGGACCATCATCATCGCAGCTGCCACTCGTCAGCACCTGCCATGC
GTCCTCCCATGCCGCCACAGTGATGCAAGCGCTCGCATGGAGTCCCTCGA
GATGCAATGCCAAGTCAGAACGGTGGGCCATTCCATGCACGATCCCCTCG
GTGAGATCCATGTGGCCGACGAATGTGCCCGTTCCGAA
UFO11268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-RA | 2722 | CG10596-RA | 207..1348 | 9..1132 | 5050 | 97.3 | Plus |
| Msr-110-RC | 2600 | CG10596-RC | 175..1226 | 99..1132 | 4585 | 97 | Plus |
| Msr-110-RB | 2695 | CG10596-RB | 302..1321 | 131..1132 | 4440 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5568516..5568996 | 1045..575 | 1950 | 97.1 | Minus |
| 3L | 28110227 | 3L | 5569117..5569363 | 574..328 | 1235 | 100 | Minus |
| 3L | 28110227 | 3L | 5573631..5573831 | 330..130 | 1005 | 100 | Minus |
| 3L | 28110227 | 3L | 5576838..5576933 | 104..9 | 480 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6859 | 920..997 | 147 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6821 | 920..981 | 137 | 72.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1148 | 907..992 | 135 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6886 | 910..997 | 130 | 65.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1164 | 920..993 | 130 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6812 | 920..995 | 129 | 67.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1165 | 911..980 | 126 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2406 | 910..992 | 124 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2664 | 910..970 | 124 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..6922 | 910..956 | 113 | 74.5 | Plus |
UFO11268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:45 Download gff for
UFO11268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RA | 207..1253 | 9..1045 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:36 Download gff for
UFO11268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RA | 207..1253 | 9..1045 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:07 Download gff for
UFO11268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RA | 207..1253 | 9..1045 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:07 Download gff for
UFO11268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5573632..5573829 | 132..329 | 100 | <- | Minus |
| 3L | 5574940..5574966 | 105..131 | 100 | <- | Minus |
| 3L | 5576838..5576933 | 9..104 | 100 | | Minus |
| 3L | 5568516..5568996 | 575..1045 | 97 | <- | Minus |
| 3L | 5569117..5569361 | 330..574 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:36 Download gff for
UFO11268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5561616..5562096 | 575..1045 | 97 | <- | Minus |
| arm_3L | 5562217..5562461 | 330..574 | 100 | <- | Minus |
| arm_3L | 5566732..5566929 | 132..329 | 100 | <- | Minus |
| arm_3L | 5568040..5568066 | 105..131 | 100 | <- | Minus |
| arm_3L | 5569938..5570033 | 9..104 | 100 | | Minus |
