UFO11269.5prime Sequence
1104 bp (1024 high quality bases) assembled on 2012-04-16
> UFO11269.5prime
CAGTCGACATGCTTCCGTCGGACGTGTGCCGCACCTGTGCGGTGCAGAAC
AGCCAATTGCTGCCCTTGTCCACTTGCCTGGACAAAGACTCCTCCAAAAG
CTACTATGCGGTGCTCCAGGAATTGACGCAAATCGATCTGGAAAACACCG
ATGACAACCTGCCGCAACATATATGCAGCGAGTGCTGGAGACGAATGGAA
AGTGCCTATACCTTTGTGCAACAGGCCAGAAAAGTCCATGGAGAGCTGCT
GGCTCAGTTGAGGGAATGTCTAGACGAATTGCCCATCGATATTCCTGCGG
AACAGAACATAAAAACGGAAGTAGACCTCGATGATGGCGGTAACAAGTCC
GAAGTGGAAGTGGACGACACCGAAGCGACGGCTTTGGAACTTAAGTGGCA
GCCGGCGAGTGGCAGCGATCGGGAATTTTGTTCTGGTCCGGAAAGCGATG
AAGATCAAGTGGAAAAGAAGTCGTATCATCTACGTCGAAGCTCTCGAAAA
GTAAAGCATCCAGTGGAAAGCGAAAACGAGGAATGTAAGCCATCTGAACC
ATCGCCGGTTAAGCGCCGTCGAGGACGCCCACCTGGTCCAGCGAAAAGCC
AGGCGATGACCACGGATGGCCGGCACGCATGTGAGGTTTGCGGAAAGACA
TTCTCCTGGTACCGCGACATGCAGCGCCACGCCAGGATCCACTTCGAGAA
CGCTTCATACGTGTGCGACACCTGTGGCAAGGGATTCCTGCGCAAGGACA
AGTACATATTTCATCTCCGATGCCACAAGAAGCGAGAGGCCAAATGGAAA
GCTCTCCAGCTCGGGAAAGAGTGGCGTTTTGCTGAGCGCCTCTATAGCTC
AGAAAGTTAAAAGAATCGAGTGCAAGCTATGCGGGTTGAGCTGCCAGCGA
ATGGAGGAGCTTAGAGCTCACCTATGGGATCACGCAGATACGGAGACCTT
AGTCACTGAGAACGGATAGTGACGTGTTAGAGAGCATTTTCCCTGGCTTG
CCATGGGGACTTGACATTATAAAGAAACAGATCTGCCGTTGAACATACCA
GATGCAATTTGGAGAGTATGCCCTGGGTGTAATGATTCAGTTCGAACTGG
TCAT
UFO11269.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11902-RB | 4601 | CG11902-RB | 144..1211 | 9..1072 | 4970 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25336103..25336610 | 533..1036 | 2145 | 97.1 | Plus |
| 3R | 32079331 | 3R | 25335603..25335916 | 138..451 | 1570 | 100 | Plus |
| 3R | 32079331 | 3R | 25335400..25335528 | 9..137 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 25335971..25336051 | 452..532 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:33:46 has no hits.
UFO11269.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:45 Download gff for
UFO11269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11902-RB | 90..1162 | 9..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:37 Download gff for
UFO11269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11902-RB | 144..1216 | 9..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:09 Download gff for
UFO11269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11902-RB | 144..1216 | 9..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:09 Download gff for
UFO11269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25335400..25335528 | 9..137 | 100 | -> | Plus |
| 3R | 25335603..25335916 | 138..451 | 100 | -> | Plus |
| 3R | 25335971..25336051 | 452..532 | 100 | -> | Plus |
| 3R | 25336103..25336651 | 533..1078 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:37 Download gff for
UFO11269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21161122..21161250 | 9..137 | 100 | -> | Plus |
| arm_3R | 21161325..21161638 | 138..451 | 100 | -> | Plus |
| arm_3R | 21161693..21161773 | 452..532 | 100 | -> | Plus |
| arm_3R | 21161825..21162373 | 533..1078 | 96 | | Plus |
