UFO11270.5prime Sequence
933 bp (932 high quality bases) assembled on 2012-04-16
> UFO11270.5prime
CAGTCGACATGTGGCCCCACCGCCACCAACGACATCTGCTAACGGCGGCA
GCCACGCTCTGCTGTCTCTTGGCCATCATCGTCCAGCCGGCCCTTTCGGA
TGAGCCCCCCATCCTTACATCCTCATCAACACCACCATCCTCAGCAGCAG
TCTCGGCCCCTGGCGATCTCCCCCAGAATTTGACGGTGGAGGCAGCGGCC
ACTGAAGCCCTGAGTGACAGCAGCGGCAAGGAGCTTAATAAGCAGCCAGC
CGAGCAACTCATCCGCGAGGTCATCGAAGGTCCAAACTTGGCCGACGAAG
TGCGCGTGGATCCGGATCTGGAGAGGGAACTCAAACGGGAAGGGGAAGAT
CCTATAGAAACAGAAACCGAAACGGAGTTCGTCGGTGTTCCAGGCTTTCT
GCCCACTGCTCTGCCTCCCAAAGATTCAGACAGTCCCACCAATGGACATG
GTTACATCCAGTTCGAGATCAACGATGAGCTGCCAGTGGAAGTGGCTCGT
CGACAAAGACCCATTGAGCAGACAGTGACCCGCTCGCGAACGGAAACCGT
GAACGAGGTGCTGTCCAATCTGTTCCCCAAGGGATTCTCGGACATTTTCC
GATTTAGTGGCAATACAGATACATCCACCACCACGTCTACGACCACGAAT
AAGGCGGTGGTCCGGCCAACAGTTGTGGATGTGGTCAGTACCACAGAGGC
AGCCAGCACTGAAAAGCAAACGAAGCCTCCAGCGCCGAATGCCACCTACT
ACAGTTACCAAACCACAGTCACGAAGGAATACCGTCGAGAATTGGGACCA
GGTCACACGGAGATAGTGGTTGAGCAGATTAAGGGATCCGGGATTCCGAG
ATGGCAGTACCACATTTCCCGAGATGAGCTGCTTAAGGATCAATCGAGCT
GCTGTGGGCGGCTCTAGTGCTGCCCAGTGTGCT
UFO11270.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6280-RA | 3706 | CG6280-RA | 310..1233 | 8..933 | 4505 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13755896..13756442 | 385..933 | 2520 | 98.9 | Plus |
| 2R | 25286936 | 2R | 13755343..13755568 | 8..233 | 1130 | 100 | Plus |
| 2R | 25286936 | 2R | 13755622..13755775 | 232..385 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:33:07 has no hits.
UFO11270.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:39 Download gff for
UFO11270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6280-RA | 1..923 | 9..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:16 Download gff for
UFO11270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6280-RA | 304..1233 | 1..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:51 Download gff for
UFO11270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6280-RA | 304..1233 | 1..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:51 Download gff for
UFO11270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13755337..13755568 | 1..233 | 98 | -> | Plus |
| 2R | 13755624..13755775 | 234..385 | 100 | -> | Plus |
| 2R | 13755897..13756442 | 386..933 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:16 Download gff for
UFO11270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9642842..9643073 | 1..233 | 98 | -> | Plus |
| arm_2R | 9643129..9643280 | 234..385 | 100 | -> | Plus |
| arm_2R | 9643402..9643947 | 386..933 | 98 | | Plus |
