UFO11271.5prime Sequence
1008 bp (1005 high quality bases) assembled on 2012-04-16
> UFO11271.5prime
CAGTCGACATGGTGGAAAATATATCACTGAATGTTACTGTAAAGTCGTCG
GCTCGGAAAAATCAACAGCAGTCGCCCGCGCTTTCGGTTAAAAAACGTGC
ACAGAAATCCCAGGATTTCGACTTTCAATTCAATGTGGACAAGCCCAAAG
TCAAGGCAATCGTTGTGCGAAGAAGGGCGCCTCCTTCGAAAGTTGAACCT
ACAAATTCATCAGTTCCCAATACCACGAAATCGCCGACGCCTTCAGTTTC
CTCCAGCAAATCCGCAATTTCCACTCTTTCAGCATCCCCCAAAGCAAATG
CATCCAACGATGATCTTATGTTCAATGTTAGCCCAACGAAACCACCTGTT
AAGAGCGTTTTAGGCGACGATTTCATGCTAAATGTGACCACAAAGCCGGT
GGTTGCCCAGAAAGCCAAGCCAAAAATCACACGAGCCGAAAGATTGGGCA
AGAAACAGAGGCAGGGCAAGCCACTGACGAAGCTCAGCGAAGAGCAGATC
ACGCGGGCGCTGAAGAGCAACAAAAAGCCAAAAAATCCAAATCAATTACC
CACGCCCGGTGACCTTTTCCGCGCTCAACTGGAGGAGGAGAGGCGGCAAA
AGCGTCGTGAAGAGGGAGGAGGGGATCAGGAAGCCAGCGCCGATGAGGAG
GATGCGAAGAAACAACTCAGGAGGGGGATCTCCGAGGGTAAAACCGAGTT
CAGCCGTTAAGGAGTCCAAAAAGTCATCAGATATTGAGGATTCCGGCGAA
TCCGGCGAAGAATCTGCAACATCCGATGAGGAACCAGATGAATCCAGTGC
ACAATCTCCTGGACAGAAAAGGAACCCAACAAACCGCGAAGAAACCACCG
AAAGCCGAGGAAACCTCGTCCACAACCGTTTCGCACCAAGAAGATCGGCC
TCTCGACCAAGCGACGTGAGGCACTCAGGCAACTGGGCCAAAGAGCGTGA
AGCCCGTCAAGGAGACATTCTTTACAGGCCTCTAAAATATTCCACGTTGG
GACTGCAT
UFO11271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8611-RC | 3917 | CG8611-RC | 104..1108 | 9..1008 | 4720 | 98.6 | Plus |
| CG8611-RB | 4145 | CG8611-RB | 104..1108 | 9..1008 | 4720 | 98.6 | Plus |
| CG8611-RA | 3614 | CG8611-RA | 104..1105 | 9..1008 | 4665 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17420979..17421926 | 1008..66 | 4165 | 98.3 | Minus |
| X | 23542271 | X | 17421983..17422042 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:33:11 has no hits.
UFO11271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:39 Download gff for
UFO11271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RB | 114..1118 | 9..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:18 Download gff for
UFO11271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RB | 104..1108 | 9..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:52 Download gff for
UFO11271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RB | 104..1108 | 9..1008 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:52 Download gff for
UFO11271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17420979..17421923 | 69..1008 | 98 | <- | Minus |
| X | 17421983..17422042 | 9..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:18 Download gff for
UFO11271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17316016..17316075 | 9..68 | 100 | | Minus |
| arm_X | 17315012..17315956 | 69..1008 | 98 | <- | Minus |
