UFO11272.5prime Sequence
936 bp (932 high quality bases) assembled on 2012-04-16
> UFO11272.5prime
CAGTCGACATGTGGTTTTTATGGCTGATCTGCTTGCTGCTGCCAATCATT
GATGCAGCTGAGGTTGAAAAATCTCCTGCAAAGCCCAACATTATATTTAT
TTTGGCGGATGATTTGGGCTTCAACGATGTGGGATTCCATGGCTCGGCAG
AGATTCCCACGCCTAACATTGATGCCTTGGCCTATTCTGGCATTATTCTG
AATCGTTACTATGTGGCACCCATTTGTACTCCATCCAGATCTGCCCTTAT
GACGGGAAAATATCCCATACACACAGGAATGCAACATACAGTTCTCTATG
CCGCTGAACCACGAGGTTTGCCCTTGGAGGAGAAAATACTACCTCAATAT
TTGAATGAGTTGGGCTACACCTCTCACATAGCTGGCAAGTGGCATTTAGG
CCATTGGAAGCTGAAGTACACTCCGTTGTATCGCGGCTTCAGTAGCCACG
TGGGATTCTGGTCGGGTCACCAGGATTACAACGATCACACCGCCGTGGAG
AACAACCAGTGGGGTCTAGACATGCGCAATGGAACACAAGTGGCCTATGA
CTTGCATGGTCACTACACCACGGATGTGATAACCCGATCACTCGGTTAAG
GTCATTGCCAACCATAATGCCACCAAGGGTCCACTGTTTCTCTACGTAGC
CCATGCGGCTTGTCACTCGAGTAATCCGTATAATCCTCTGCCGGTTCCGG
ACAACGATGTGATCAAGATGTCGCACATTTCCCAACTATAAACGGCGAAA
ATTTGCTGCTATGGTTTCCAAAATGAACACTCTGTGGGTCAATTGTGGAT
CAGCTGCCAAGTCGAACATGCTGGAAACTCGATCATCATATTCTCCTCGG
ATAACGGGGGACAGCCCAAGGATTCAACCTTAACTTCACCTCCACTATCC
CCTGGAAGGTGTGAAAAATTACCCTGGTGGGGATGC
UFO11272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8646-RB | 1763 | CG8646-RB | 53..973 | 9..926 | 4320 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12657815..12658207 | 364..758 | 1875 | 99.5 | Plus |
| 2R | 25286936 | 2R | 12657458..12657619 | 116..277 | 810 | 100 | Plus |
| 2R | 25286936 | 2R | 12657284..12657392 | 9..117 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 12658313..12658487 | 751..919 | 470 | 92.6 | Plus |
| 2R | 25286936 | 2R | 12657673..12657762 | 275..364 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:33:15 has no hits.
UFO11272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:40 Download gff for
UFO11272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8646-RB | 41..975 | 1..931 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:20 Download gff for
UFO11272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8646-RB | 43..977 | 1..931 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:55 Download gff for
UFO11272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8646-RB | 43..977 | 1..931 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:55 Download gff for
UFO11272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12657274..12657391 | 1..116 | 96 | -> | Plus |
| 2R | 12657459..12657618 | 117..276 | 100 | -> | Plus |
| 2R | 12657675..12657762 | 277..364 | 100 | -> | Plus |
| 2R | 12657816..12658207 | 365..758 | 99 | -> | Plus |
| 2R | 12658321..12658497 | 759..931 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:20 Download gff for
UFO11272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8544779..8544896 | 1..116 | 96 | -> | Plus |
| arm_2R | 8544964..8545123 | 117..276 | 100 | -> | Plus |
| arm_2R | 8545180..8545267 | 277..364 | 100 | -> | Plus |
| arm_2R | 8545321..8545712 | 365..758 | 99 | -> | Plus |
| arm_2R | 8545826..8546002 | 759..931 | 92 | | Plus |
