UFO11273.5prime Sequence
1118 bp (1016 high quality bases) assembled on 2012-04-16
> UFO11273.5prime
CAGTCGACATGACGATGAAATTGTTCTGCATTTGGATTGCTAGTCACGTT
CTCAGTGTTCTGGTTTTAGCGGCCCCCACAAGCGAGGATGTACTCAACCA
GGACACGCCTTACATGAAGGAACTAATGCGTCAAGCCAAAGCTGCTGAGA
TCGAGAGCTTTATGAACCAGAAGGTGGATCCGTGCAAGGATTTCTACGCA
TTCTCCTGTGGCAACTATAAACGCATCAACTCGGCTTTGAACATGCGGGT
ATTGACTACTGGAGTGTTCGAGACTTTGACAAAAGGGCTCAACCGAAAGA
TCCTGAAGATGCTCAACACACCCCATGATAGCCACGACACTCCGGAGGAC
ATTCAGGTGAAGCACTTCTACGAGTCCTGTCTCCAGATCAAGGAGCTCAA
CTCGACGTACAGCGAAAAGCTGAAGCGGCTCATTGCAGAATTTGGAACGA
TGCCGCTGCTGGAAGGATCCTCCTGGCAGGAGGACGACTTTGACTGGCTG
AATACTACTGCTCGCATGGCCCACCGATACGGAATAATGTCCATTATAGG
CGTTGGAGTCGCCACGGACTTCGCCAATAACCAAAAAAACATTATTTACA
TAAACCAGCAGGAGTTCCCATTAAAGACACGTTCCATGTATATGGATAAC
GAAACGGCCATCTACCGCCAAAATTATCAGAATAATATCCAGCTCATTTT
GGAGAAATACTTAGGTGTTAAGGACGAATTGGCAAGAAAAGCGGCCAAGG
AAATGTTTGAATTCGAGGTGGACTTGGCCCATGGACTGGTGGACAACAAC
AAACACCTGAACCTAAGGACCTGATCGAACTTCTGACTGTCGCTGAATTG
CGCGAGAGATATGCCCCCCACCTTGGACACCGACAATTGATATTCGTGAG
CATGGGAGAAGAAGATTTCCGACAGGTCTACGATTACAACAGACGTTATC
AGCAAATTTGGTCGAGGTGATCGAGCGTACGCCAGAGCACTGGTGGCCAC
TATTTATTCTCGCTGATCTGGGGAGTTAATACAGAAACAGTTGAGTGCGA
AGCGAACGAGGCTGTGTGACTCACAGACGTACTCGGAGATCTGACAACTG
ATCTACGCCGCTACAGAA
UFO11273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14527-RA | 2154 | CG14527-RA | 10..1143 | 7..1115 | 4855 | 96.6 | Plus |
| CG14526-RC | 2323 | CG14526-RC | 34..1042 | 21..1022 | 1890 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28880801..28881807 | 7..1009 | 4605 | 98.7 | Plus |
| 3R | 32079331 | 3R | 28883726..28884499 | 21..794 | 1860 | 82.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:33:59 has no hits.
UFO11273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:47 Download gff for
UFO11273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14527-RA | 1..1047 | 9..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:45 Download gff for
UFO11273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14527-RA | 5..1058 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:15 Download gff for
UFO11273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14527-RA | 5..1058 | 1..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:15 Download gff for
UFO11273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28880796..28881838 | 1..1038 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:45 Download gff for
UFO11273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24706518..24707560 | 1..1038 | 98 | <- | Plus |
