UFO11274.5prime Sequence
1099 bp (998 high quality bases) assembled on 2012-04-16
> UFO11274.5prime
CAGTCGACATGGAGAGAGCTGAAGGGTGTGAAGTCGTCTCTCCGATCGAT
CAATCGCGGGGTGGAAAGGAAAGCGAAGCTTCCGCAGACGAATCACTGTT
GTTTTACTGCAAAAGCAAAGAGGCCGAAGTCAAACGCATAAACAAGGAGT
TGGCCAATATACGAAGCAAATTTAAAGGAGACAAAACCCTCGACGGCTAT
CAGAAAAAGAAATATGTCTGTAAGCTATTATTCATATTTCTCCTCGGCCA
TGACATCGACTTCGGGCACATGGAGGCGGTCAATTTGCTGTCCTCCAACA
AATACTCAGAAAAGCAGATTGGTTACCTTTTCATCTCAGTGTTGGTGAAC
ACCAACAGCGACCTTATTCGGCTGATCATCCAATCTATAAAGAATGATTT
GCAGTCGCGTAATCCTGTGCACGTTAATCTGGCACTACAATGCATTGCCA
ACATTGGAAGTCGGGATATGGCCGAGTCCTTTTCCAACGAAATACCCAAG
CTACTCGTCTCGGGCGACACCATGGACGTGGTGAAGCAGTCGGCGGCGCT
ATGCCTGCTCCGCCTGTTCCGCTCCTCGCCGGACATCATTCCCGGTGGTG
AGTGGACTTCGCGCATTATCCATTTGCTCAATGATCAGCACATGGGAGTG
GTCACAGCGGCCACCTCGCTGATCGACGCCTTGGTGAAGCGCAATCCGGA
CGAGTACAAGGGTTGTGTTAATTTGGCTGTTTCACGCTTATCCCGGATCG
TAACAGCCAGCTACACGGATCTTCAGGATTACACATATTACTTTGTGCCG
GCTCCATGGCTATCGGTGAAACTTCTGCGATTGCTGCAAAACTACAATCC
AGTGACCGAAGAGGCCGGTGTGCGGGCCCGCTTGAATGAAACTTTGGAGA
CGATTTTGACAGGCGCAGAGCCGCCAAGAGTAGATGTGCAGCACTCTACG
CAAAGACGCGTGCTCTCGAGGCATCACCTGATCATCACAGCGACAGCGAG
CGACTTCTGTCCGCGCTGCACAGTGGGACAGTCTAGCATCCGGAACACCT
GGCGCTATCTGCCTGGAGTCATGTGCAACTGCCAATCGAGTTCTTCGAC
UFO11274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-2alpha-RB | 3432 | CG4260-RB | 58..1159 | 5..1076 | 4715 | 96.8 | Plus |
| AP-2alpha-RA | 4711 | CG4260-RA | 592..1592 | 106..1076 | 4210 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 411781..412237 | 777..321 | 2285 | 100 | Minus |
| 2L | 23513712 | 2L | 412446..412658 | 321..109 | 1050 | 99.5 | Minus |
| 2L | 23513712 | 2L | 411586..411721 | 909..774 | 680 | 100 | Minus |
| 2L | 23513712 | 2L | 412724..412828 | 109..5 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:34:03 has no hits.
UFO11274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:48 Download gff for
UFO11274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Adaptin-RB | 55..1091 | 1..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:47 Download gff for
UFO11274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-2alpha-RB | 55..1091 | 1..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:16 Download gff for
UFO11274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-2alpha-RB | 55..1091 | 1..1020 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:16 Download gff for
UFO11274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 412725..412830 | 1..108 | 98 | | Minus |
| 2L | 411457..411718 | 777..1020 | 92 | <- | Minus |
| 2L | 411782..412237 | 321..776 | 100 | <- | Minus |
| 2L | 412447..412658 | 109..320 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:47 Download gff for
UFO11274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 411457..411718 | 777..1020 | 92 | <- | Minus |
| arm_2L | 411782..412237 | 321..776 | 100 | <- | Minus |
| arm_2L | 412447..412658 | 109..320 | 99 | <- | Minus |
| arm_2L | 412725..412830 | 1..108 | 98 | | Minus |
