UFO11275.5prime Sequence
1090 bp (970 high quality bases) assembled on 2012-04-16
> UFO11275.5prime
CAGTCGACATGGCAAGTTTACAAATTAGGATTGTACTTAGAAGGGAGAGC
AGAAAATCAAATTCCTGCATTGGCGGCAATCAATCGCCCACGGGCACGCC
GCGCCCCTTTCTGCGATCCAACACCCTTCCTCTGCGACAGCGACCCAGTC
CGGCGGAGGTCCAATATGAAAGCTACGTGCAGGCCACGGTGGCGGCCAAT
GCCAAGTCGCCGGTGGAGCAGCTGGAGAGCGCAAAGTCTCCAGGTGCTCC
GCCACCACCGCCTCCGAGGCGCCACCACCTGTTGGCCACCACGCCCACGG
GAAAACCCACTTTCAAGGAGGATCGACCGCAGGAGAATGGTTCCGTAAGC
AGCAGCTCCCTGCAGTCGCCAGTCATCTCGGAAACCGGTCAGACTACGGC
AGATGCACAAGCTCTGTTCCAGATACGAGAACAAATGGCCCTGAGCCTGA
GGCGTCTTAAGGATCTGGAGGAGCAGGTGAAAGTCATACCCGACATGGAG
CTGGAACTTAATTCTCTTCGCTCGGAAAAGCAGAAATTGCTGCGCAGAAA
CGAGGAGTTGATGCGAAGTCAGCGGCAGACGCCTTCGCCGCCAAGTCCGG
GACTCAAGACTGCCTCACCCGTGCAGTTCACTCCGCAAAGGATCAGTCCA
GTGTCGCTGGAGAGCCTAGGAGCACGCATGCGCAGCAGTTCCACCTCGGC
ATCTCCATCTCCAAGCGTTGTCCGTCGAGATGTCTCCACTCAAGCAGTGG
TGCGACCACCTGCCACACGAGATGTGTCCGTTGGCCACCAGCCCACCACG
AGAAATGTTGGAGTTCAGCCGTCGGAAACTGTCTACTCCAAGGAGGAGCT
GGGATAAGAAAGTGGAGCAGGCACTAACCAATGCACAAAAGCAACAATTG
AGAAAGCTCATCTCTGTGGGCACCCAAATGTATGTGCCCCAGAGGGACCA
AAAAGATAGTGCGTGCAAACCACACCGGCACGACCAACTCAAGTACCATG
TGGGGAGTCACCGTGAAGCGCCACAGAGACTTTACCAGTGCAGGCCGATG
TGCGTCATGTGGGCAGCTCTGATGATCGCCTGGATGATGT
UFO11275.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-RE | 3652 | CG10249-RE | 21..1112 | 8..1090 | 5110 | 98.4 | Plus |
| CG10249-RB | 3648 | CG10249-RB | 21..1112 | 8..1090 | 5110 | 98.4 | Plus |
| CG10249-RI | 4059 | CG10249-RI | 485..1523 | 61..1090 | 4845 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14904853..14905453 | 1090..499 | 2435 | 96.7 | Minus |
| 2R | 25286936 | 2R | 14905514..14905953 | 500..61 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 14906018..14906070 | 60..8 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:34:07 has no hits.
UFO11275.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:49 Download gff for
UFO11275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RE | 4..1103 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:49 Download gff for
UFO11275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RB | 13..1112 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:18 Download gff for
UFO11275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RB | 13..1112 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:18 Download gff for
UFO11275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14904853..14905451 | 501..1090 | 97 | <- | Minus |
| 2R | 14905514..14905953 | 61..500 | 100 | <- | Minus |
| 2R | 14906018..14906076 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:49 Download gff for
UFO11275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10792358..10792956 | 501..1090 | 97 | <- | Minus |
| arm_2R | 10793019..10793458 | 61..500 | 100 | <- | Minus |
| arm_2R | 10793523..10793581 | 1..60 | 93 | | Minus |
