UFO11277.5prime Sequence
1129 bp (1028 high quality bases) assembled on 2012-04-16
> UFO11277.5prime
CAGTCGACATGTTCCCGTCGTCGATTTTGGGGCGCAGCTATTTGCTTTTT
ATGCTGGTGCTCGCCGTGGGCGTGTTCGCCCAACACGAGTGGCAGGCCCG
GGATGCCTTTGATGAGATAAAGAGGCAGTTCGACAAGGTGAACGCGGATA
ACTGCCCCATCCAACACCATTCGGACCTTTTCATGCCCATGGACGCGGTG
TCCCACAAGCCGGACATCAAGGAGATCAACGTGAATCCGGTGTTCCCCAA
CCGAACTGCCCTGCTGCATCTGCAGAATATGGCCCTTAGCAGAAGCTTCT
TCTGGAGCTACATCCTCCAGTCGAGGTTTATTCGACCCGCCATCAACGAC
ACCTACGATCCCGGCATGATGTACTACTTTCTGTCCACCGTAGCCGATGT
ATCCGCCAACCCACATATCAACGCCTCGGCCGTGTACTTCTCCCCCAACA
GCTCGTATTCGTCGTCGTATCGCGGCTTCTTCAATAAGACGTTCCCCAGA
TTCGGGCCAAGAACCTTCAGGCTGGACGACTTCAACGATCCCATTCATCT
GCAGAAGATATCGACGTGGAATACTTTCGATGTTCAGGATCTGGGCGCCC
ATCACCCGGACTCCATATCCAAGGACTACACCCACGACCTGTATAAAATA
AACGAGTGGTACCGCGCCTGGCTACCAGACAACGTCGAGGGACGGCACGA
TACGAAGATCACCTACCAGGTGGAAATCCGCTATGCGAACAACACAAACG
AGACGTATACCTTCCACGGACCGCCTGGCTCTGAAGAAAACCCTGGTCCG
ATTAAATTTACAAAGGCCGTACTTCGATTGTGGCAGGTCCAACAAGTGGC
TGGTGGCCGCAGTAGTGCCAATTGCGGATATCTACCCCCGACACACGCAG
TTCGTCACATTGAGTATCCCAAATACACGGCCGTTTCGGTCTGAGATGGA
CTTCGAGCGTATCGACATAAACAGTGTCATGGGTGAGCAACAAAGACTAT
CACTTTGCCGATACCGGCGCGTGTAAAAAGACGACGAAGTGTGACAATAC
AAGCTGGGCCTTAGGCGCGGTGCTACATGCCGTGTAGCAGTTTCGCTGCC
ACGTATGCGGGCACCTTATCTGGGCGGAG
UFO11277.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31195-RB | 4001 | CG31195-RB | 223..1369 | 9..1126 | 4865 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20761234..20762147 | 922..9 | 4475 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:34:11 has no hits.
UFO11277.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:49 Download gff for
UFO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31195-RB | 211..1184 | 1..972 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:51 Download gff for
UFO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31195-RB | 215..1188 | 1..972 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:21 Download gff for
UFO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31195-RB | 215..1188 | 1..972 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:21 Download gff for
UFO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20761124..20761175 | 923..972 | 96 | <- | Minus |
| 3R | 20761234..20762155 | 1..922 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:51 Download gff for
UFO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16586846..16586897 | 923..972 | 96 | <- | Minus |
| arm_3R | 16586956..16587877 | 1..922 | 99 | | Minus |
