UFO11278.5prime Sequence
1174 bp (1059 high quality bases) assembled on 2012-04-16
> UFO11278.5prime
CAGTCGACATGTTGCACTGCCAAGTGGAAGGGGCAAAAGCAGAGCAACGT
GAGTGTCCTGTGATGCACTCAGAGAATTCTGCGGAAACTTTCAGTTCGGA
GGAATCCCAAGCCAGTGACTGTAACCAGCCGTTGGATGTTCAAAGTCCAA
AGCTGACAACAAACATAGAAGAGTCCTTTAAGGTGGACTGTAAGCTTTCG
CTGAATACTCTTCTGTCACCTATTAATATCACCGATCCATTGCTCATGTG
TTCTATATCAGAGTTTAACAAAGAGGAACAAACTATGGAGCCGTATTTTA
TTCAGGAATTAGATATGGCTTGTGCTGGCCAAGAAGTTGAGCAAGTTGCG
GAGGAAAATGTATTCGAAACTGGACCACAGTTGAAGCTACCGGAAAATCA
ACCTATCAACGATTCGATAACAACAGAAACTAATGAAACGAAGTTACCGT
CAACGGAAGCACTAAATGTTTTAAATTTAGCAGAATTCAGTGAACCAGTA
ATGGAAAAATCAAATATATCCATTGAAGAAGTCAATCTTACAGGAGCCGA
AGAAATAAATGAACCCATAAGTGATGAACCAAATAGTCAACTAGTTGAAA
GTGCTGCCAAACTACAGCCAAAATCACTTGGAATTCAAATACCTCCTCTA
CAGATCGAAGATTTGATTTCTCCATTAGTAGAACAACCGAAGATAGCAAC
TAAACTGGGTGTTATTAGTTTCTTGACAGGAAACAAGTTGGCTTTAACGC
CCAGTGTAAGGCTCTCTTTTGGTGATAGAGTAACGACCAGGACAAACAAA
AAATCCAAGGAAATTGTTCAACAGCAAGCTTCTAAAGCACTAAAGGCGTT
AATTTCAGTTTTCACAATGCAGCGAAGGCTAGAGGCATCACAGTGTGATA
ATTCCAATAATAGCCGATCGAAACGATTTGAACAACTAAAAAGCTCTTTA
CCTTTTCACGAGTATTTAGGCAGAACATCTTTCAGCCAACTTCGAAGATA
GAAAGCCGCCAGCAGATACTGATGCTAACTCACTGGAGTCTGGGGAACCA
ATTTTAAAAGTACAGGCGCATACAAGAACACTACCCATACCCTACGACAG
ATGCTGGCGAGACTACTTGATTGCCTGACGTAAGCCAGATCGTTTTAGGT
GGAGGTTCCGAAGTGTAGTGTATA
UFO11278.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14128-RE | 1898 | CG14128-RE | 47..1156 | 8..1110 | 5360 | 99.3 | Plus |
| CG14128-RC | 1847 | CG14128-RC | 47..1156 | 8..1110 | 5360 | 99.3 | Plus |
| CG14128-RF | 1950 | CG14128-RF | 335..1208 | 244..1110 | 4180 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11879510..11880167 | 244..901 | 3275 | 99.8 | Plus |
| 3L | 28110227 | 3L | 11879220..11879455 | 8..243 | 1180 | 100 | Plus |
| 3L | 28110227 | 3L | 11880220..11880423 | 897..1095 | 760 | 96.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:34:15 has no hits.
UFO11278.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:50 Download gff for
UFO11278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14128-RE | 47..1168 | 8..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:53 Download gff for
UFO11278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14128-RC | 47..1168 | 8..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:23 Download gff for
UFO11278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14128-RC | 47..1168 | 8..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:23 Download gff for
UFO11278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11879220..11879455 | 8..243 | 100 | -> | Plus |
| 3L | 11879510..11880163 | 244..897 | 100 | -> | Plus |
| 3L | 11880221..11880452 | 898..1119 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:53 Download gff for
UFO11278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11872320..11872555 | 8..243 | 100 | -> | Plus |
| arm_3L | 11872610..11873263 | 244..897 | 100 | -> | Plus |
| arm_3L | 11873321..11873552 | 898..1119 | 95 | | Plus |
