UFO11279.5prime Sequence
1146 bp (1011 high quality bases) assembled on 2012-04-16
> UFO11279.5prime
CAGTCGACATGGTTCGAGTATCGCTAGTTCCATTCATTATAATCGGATTT
ATGGCGCACTTTTGTGCGTGTGAGGATGTTACATCCTCAGATCTTCTGTA
TATTAAGACCATGGGACCCTCGGCGATTTTAACAAAAATGCCGAACATAA
CCAATGAGTTTAGTTCAAGAATTTTCAGTTCTTTTCGCATATTGCCATCA
TCAAAGCCAAAAACAAATGGATCGCTTAAGCGTAGTCAAAACGCCACGAA
CTTGAGTTACTCCTCCTCTGAGATTTCCAATCAAAGACGAGTTCGACGAA
AAGCAGCGGCCGACATGCTTAGCCGTAATATCTCAATGATTTTGGAAAAT
CTACTCAAACGCTACGAGCAATCCCAACTACCCACGCATGGCCAGGGAGT
TCCGACGGTGGTGCAAACGAATATCCTAATCCGTAGCATGGGTCCAGTTT
CCGAATTGGACATGGACTACTCGATGGATTGCTATTTCCGGCAGTATTGG
CGGGACAAACGGCTGAGCTTCAAGGGACCCATCAAGAGCTTATCTCTGAG
CATCAAAATGCTGGACAAGATCTGGAGGCCAGATACATATTTTTACAATG
GCAAGCACTCGCAAATTCACATGATTACCGTGCCCAATAAATTGCTTCGA
TTGGATCAGAATGGAGGGATTCTGTATTCAATGAGACTAACAATTAAGGC
TACTTGTCCCATGGAGCTGCAAAACTTTCCAATGGATAGACAATCATGCC
CTCTAGTAATTGGAAGTTATGGCTATATTAACCAACAGTTGATCTATGAA
TGGAAAAATCACGACGATGCGGTGTCCTTTGTTCCAGGAATGACTCTAAA
TCAATTCGATCTCATTAGCATGATGCATCGCAATTTTACAACCGTTCGAC
GGGAAGGTGATTTTTCAGTCCTGCATGTAGCCTTTTAATCTCAACGTCAC
ACAGGATATTTTTCTCATTCAAGTATATGTACCCTGTATCTGATCGTGTA
CTGTCATGGTCCTCGTCTGATACATCGCGAGCCACCAGCGACGAGTGAGT
CTTGCGTACTCAGTGCTGACCTGTCACCATAGTCTGGAACTCCGATCGAT
TGCCCAAGTCCAATGCCAAAGCTAGATGGTTCTATGATGACCTTCT
UFO11279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8916-RB | 2019 | CG8916-RB | 148..1238 | 9..1088 | 5030 | 98.3 | Plus |
| CG8916-RC | 1859 | CG8916-RC | 185..1078 | 206..1088 | 4045 | 97.9 | Plus |
| CG8916-RC | 1859 | CG8916-RC | 148..185 | 9..46 | 190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15922468..15923107 | 46..685 | 3200 | 100 | Plus |
| X | 23542271 | X | 15923320..15923525 | 769..975 | 875 | 98.1 | Plus |
| X | 23542271 | X | 15923166..15923250 | 684..768 | 425 | 100 | Plus |
| X | 23542271 | X | 15922102..15922139 | 9..46 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:34:19 has no hits.
UFO11279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:51 Download gff for
UFO11279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8916-RB | 148..1245 | 9..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:55 Download gff for
UFO11279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8916-RB | 148..1245 | 9..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:24 Download gff for
UFO11279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8916-RB | 148..1245 | 9..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:24 Download gff for
UFO11279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15922102..15922139 | 9..46 | 100 | -> | Plus |
| X | 15922469..15923107 | 47..685 | 100 | -> | Plus |
| X | 15923168..15923250 | 686..768 | 100 | -> | Plus |
| X | 15923320..15923522 | 769..972 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:55 Download gff for
UFO11279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15816135..15816172 | 9..46 | 100 | -> | Plus |
| arm_X | 15816502..15817140 | 47..685 | 100 | -> | Plus |
| arm_X | 15817201..15817283 | 686..768 | 100 | -> | Plus |
| arm_X | 15817353..15817555 | 769..972 | 98 | -> | Plus |
