UFO11280.5prime Sequence
1151 bp (1042 high quality bases) assembled on 2012-04-16
> UFO11280.5prime
CAGTCGACATGTTGCACTGCCAAGTGGAAGGGGCAAAAGCAGAGCAACGT
GAGTGTCCTGTGATGCACTCAGAGAATTCTGCGGAAACTTTCAGTTCGGA
GGAATCCCAAGCCAGTGACTGTAACCAGCCGTTGGATGTTCAAAGTCCAA
AGCTGACAACAAACATAGAAGAGTCCTTTAAGGTGGACTGTAAGCTTTCG
CTGAATACTCTTCTGTCACCTATTAATATCACCGATCCATTGCTCATGTG
TTCTATATCAGAGTTTAACAAAGAGGAACAAACTATGGAGCCGTATTTTA
TTCAGGAATTAGATATGGCTTGTGCTGGCCAAGAAGTTGAGCAAGTTGCG
GAGGAAAATGTATTCGAAACTGGACCACAGTTGAAGCTACCGGAAAATCA
ACCTATCAACGATTCGATAACAACAGAAACTAATGAAACGAAGTTACCGT
CAACGGAAGCACTAAATGTTTTAAATTTAGCAGAATTCAGTGAACCAGTA
ATGGAAAAATCAAATATATCCATTGAAGAAGTCAATCTTACAGGAGCCGA
AGAAATAAATGAACCCATAAGTGATGAACCAAATAGTCAACTAGTTGAAA
GTGCTGCCAAACTACAGCCAAAATCACTTGGAATTCAAATACCTCCTCTA
CAGATCGAAGATTTGATTTCTCCATTAGTAGAACAACCGAAGATAGCAAC
TAAACTGGGTGTTATTAGTTTCTTGACAGGAAACAAGTTGGCTTTAACGC
CCAGTGTAAGGCTCTCTTTTGGTGATAGAGTAACGACCAGGACAAACAAA
AAATCCCAGGAAATTGTTCAACAGCAAGCTTCTAAAGCACTAAAGGCGTT
AATTTCAGTTTTCACAATGCAGCGAAGGCTAGAGGCATCACAGTGTGATA
ATTCCAATAATAGCCGATCGAAACGATTTGAACAACTAAAAAGCTCTTTA
ACCTTTTCACGAGTATTTAGGCAGAACATCTTTCAGCAACTTCGAAGAAA
GAAGCCGCCAGCAGAATACTGATGCTACTCACTGGAGTCTGGGACCCAAA
TTTTAAGTACAGGCGCATACAAAGACCACTACCATACCCTACCGACAGAT
GCCTGGCGAAGACTACTGATGGCTTGACCGTAGCAGGATTCAGCTTTAAG
T
UFO11280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14128-RE | 1898 | CG14128-RE | 47..1205 | 8..1151 | 5275 | 97.8 | Plus |
| CG14128-RC | 1847 | CG14128-RC | 47..1205 | 8..1151 | 5275 | 97.8 | Plus |
| CG14128-RF | 1950 | CG14128-RF | 335..1257 | 244..1151 | 4095 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11879510..11880167 | 244..901 | 3260 | 99.7 | Plus |
| 3L | 28110227 | 3L | 11879220..11879455 | 8..243 | 1180 | 100 | Plus |
| 3L | 28110227 | 3L | 11880220..11880428 | 897..1097 | 620 | 94.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:34:24 has no hits.
UFO11280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:51 Download gff for
UFO11280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14128-RE | 47..1163 | 8..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:58 Download gff for
UFO11280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14128-RC | 47..1163 | 8..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:26 Download gff for
UFO11280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14128-RC | 47..1163 | 8..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:26 Download gff for
UFO11280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11879220..11879455 | 8..243 | 100 | -> | Plus |
| 3L | 11879510..11880163 | 244..897 | 99 | -> | Plus |
| 3L | 11880221..11880447 | 898..1115 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:58 Download gff for
UFO11280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11872320..11872555 | 8..243 | 100 | -> | Plus |
| arm_3L | 11872610..11873263 | 244..897 | 99 | -> | Plus |
| arm_3L | 11873321..11873547 | 898..1115 | 93 | | Plus |
