UFO11281.5prime Sequence
1166 bp (1066 high quality bases) assembled on 2012-04-16
> UFO11281.5prime
CAGTCGACATGAAGACACGTTTCAATACCTTCGATATAATCTGCGGAGTG
GCGGAACTGCAAAAGCTGGTCGGCTGGCGAGTGAATCAGATCTATGACGT
GGATAACAAGACCTACCTCTTCCGGATGCAAGGGACCGGTGCAGTGGAGA
AGGTCACTCTGCTAATAGAATCTGGTACAAGATTCCATACCACTAGGTTC
GAATGGCCCAAGAACATGGCTCCGTCCGGTTTCAGCATGAAGTTGAGGAA
GCACTTGAAGAACAAGCGCCTGGAAAAGGTTCAACAGATGGGTAGCGATC
GTATTGTTGACTTTCAGTTCGGTACCGGTGATGCCGCCTACCATGTTATT
TTGGAGCTCTACGATCGTGGTAATGTGATCCTCACCGACTACGAGCTGAC
CACGTTATATATTTTGCGTCCGCATACGGAGGGCGAGAACCTGCGCTTCG
CCATGCGCGAGAAATATCCCGTGGAACGGGCCAAACAGCCCACGAAGGAA
CTGGAACTGGAAGCTTTGGTTAAGCTGTTGGAAAATGCCAGGAACGGCGA
CTATTTGCGACAGATTCTAACACCCAACTTGGACTGTGGTCCGGCAGTTA
TAGAGCATGTTCTCCTCTCACACGGCTTGGACAATCACGTTATCAAAAAG
GAAACAACGGAAGAAACGCCGGAGGCGGAGGACAAGCCGGAGAAGGGCGG
TAAAAAGCAACGTAAGAAGCAACAGAATACGAAACTGGAACAGAAACCAT
TTGACATGGTTAATGACTTGCCAATTCTTCAGCAAGCAGTAAAGGATGCT
CAAGAGCTTATAGCTGAGGGAAATAGTGGAAAAAGTAAAGGCTACATTAT
TCAAGTTAAAGAGGAAAAGCCTACAGAGAATGAACGGTGGAGTTTTTCTT
TAGAACATCGAATTTCATCCCTACCTCTTTATTCAATTCAAAACTTTGAA
AGGCCACATTTGAGTCCTTTATGGAAGCCGTTGATGATTTTACTCTACGC
AGAGTCGCAAAAGATTGACATGAAACGCTACAGCAGAGCGTGAGGCACTA
AAAGCTGTTCTATGTCAGAATGACACGCAAGCGTTCTAAGATGACAAGTC
AAGATGTGAAGGAAGAGCCAGGCTATACGTTCATCAAGGTCTTGGTGGAA
TATGCATTCGGCGTGT
UFO11281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clbn-RC | 3258 | CG11847-RC | 169..1253 | 8..1080 | 5090 | 98.7 | Plus |
| Clbn-RB | 3270 | CG11847-RB | 181..1265 | 8..1080 | 5090 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25127932..25128662 | 65..795 | 3655 | 100 | Plus |
| Y | 3667352 | Y | 3042183..3042502 | 399..65 | 1370 | 94.6 | Minus |
| Y | 3667352 | Y | 3027579..3027898 | 399..65 | 1355 | 94.3 | Minus |
| Y | 3667352 | Y | 3034870..3035189 | 399..65 | 1355 | 94.3 | Minus |
| 3R | 32079331 | 3R | 25128731..25128999 | 793..1053 | 945 | 97 | Plus |
| Y | 3667352 | Y | 3026959..3027227 | 1053..793 | 855 | 94.8 | Minus |
| Y | 3667352 | Y | 3034250..3034518 | 1053..793 | 825 | 94.1 | Minus |
| Y | 3667352 | Y | 3041563..3041831 | 1053..793 | 825 | 94.1 | Minus |
| Y | 3667352 | Y | 3027412..3027575 | 652..484 | 645 | 93.5 | Minus |
| Y | 3667352 | Y | 3034703..3034866 | 652..484 | 645 | 93.5 | Minus |
| Y | 3667352 | Y | 3042016..3042179 | 652..484 | 645 | 93.5 | Minus |
| Y | 3667352 | Y | 3027296..3027414 | 795..677 | 595 | 100 | Minus |
| Y | 3667352 | Y | 3034587..3034705 | 795..677 | 595 | 100 | Minus |
| Y | 3667352 | Y | 3041900..3042018 | 795..677 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 25127810..25127867 | 8..65 | 290 | 100 | Plus |
| Y | 3667352 | Y | 3027963..3028020 | 65..8 | 290 | 100 | Minus |
| Y | 3667352 | Y | 3035254..3035311 | 65..8 | 290 | 100 | Minus |
| Y | 3667352 | Y | 3042567..3042624 | 65..8 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:34:29 has no hits.
UFO11281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:52 Download gff for
UFO11281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clbn-RC | 169..1246 | 8..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:01 Download gff for
UFO11281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clbn-RB | 181..1258 | 8..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:28 Download gff for
UFO11281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clbn-RB | 181..1258 | 8..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:28 Download gff for
UFO11281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25127810..25127866 | 8..64 | 100 | -> | Plus |
| 3R | 25127932..25128661 | 65..794 | 100 | -> | Plus |
| 3R | 25128733..25128999 | 795..1053 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:01 Download gff for
UFO11281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20953532..20953588 | 8..64 | 100 | -> | Plus |
| arm_3R | 20953654..20954383 | 65..794 | 100 | -> | Plus |
| arm_3R | 20954455..20954721 | 795..1053 | 97 | == | Plus |
