UFO11282.5prime Sequence
1127 bp (1033 high quality bases) assembled on 2012-04-16
> UFO11282.5prime
CAGTCGACATGAGCAGGAATCGTAGGCGAAGCTTCCCCAGCAGCCAATAT
GAAGATAAGACCGCCGCTGCACAGCCAAGTGGAAGTAGCTTGAGATCCCA
ATCTCTGTCCAGGCTGGACATCTCGGTTCAAAACTCATCCATCTATTACA
ATGATACGCGAAACACGCGACCACAAATGGTCAGTGTGGCCGTCGGCACA
GTTTCAACGGATATCCTGAATGGGCGCACATCATTCTTGTCCCTTAGTCA
GTCTCACGGGAGTGAAGTGGATTTGCCTTCGTTCTACGAAAGCTTTAATC
CAACTTTTCTTCCCAAGCTGCCTATCAGAAGATTTCCCCATATGCTTGTG
GGGGCATCAAATGAGCCTGAGATTTCGAAAAACCAGCCAGCAATTCCACC
ATCTAGGCCAATTGAGCCAATATCTGAGGTGCCGTTTGTGGAACCGGCCT
TTGAGAAAAAATACTCTAGGACCCGTGGATTTAGCAAGGAATTGTCCACA
CACAGGGATAATGAGAATGAATATATCGAGAGCACAGATGAGGTGTCTCA
GATGTTGAGCTTTACTAGCTATACGGATGAATATGATAGGGCAGAACCAC
TCATTACCAAAACGCAAAAGTTTTATAAAAAGAGATCCCCCTTGATTCCC
AAATACGATTCCGAGGATTCATATGTGGTCCCTAAGGAAACCGATCAACA
GGAATCGGGTCTCTCGTTCAATGTAACTACAGTACAGTTGGCCGATACCG
CATCGCCGGAATCTTTCAGCGAATACGACGGAATCGAACGCGCAAGCAAT
CGTTCGACATGGAAAAGTAAAAATTCGAAGGAGTCCTTTGACTTTAGCCG
TGGTGGAAGACGACTTGGCTCCGGTATGGTTTTTATCTATATGGTGATAC
CACCGGACGGCGGATTCGGTTGGGTATCATGGTGCTGTCCTTCCTCGCCC
AGCTGATATCGATGGTTTATTTTACCATTGGGTCTATGCATCCATTGCCC
AGGATCTGGATGTCTCATATCGTCGTATCGTTTGTGCCAGTGTCCAGATT
GATGCTACTCACTAGCGGAGCGTTTCTGCTGTCTGATATCGGTTTGATCG
AAGTACCATGCTGATCTGGTTCCGAGT
UFO11282.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12866-RB | 2806 | CG12866-RB | 26..1120 | 9..1088 | 5050 | 98.4 | Plus |
| CG12866-RD | 2815 | CG12866-RD | 26..1120 | 9..1088 | 5050 | 98.4 | Plus |
| CG12866-RE | 2810 | CG12866-RE | 26..1124 | 9..1088 | 5000 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14668497..14669101 | 30..634 | 3025 | 100 | Plus |
| 2R | 25286936 | 2R | 14669268..14669518 | 634..884 | 1160 | 99.2 | Plus |
| 2R | 25286936 | 2R | 14669587..14669790 | 885..1075 | 435 | 91.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:33:51 has no hits.
UFO11282.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:46 Download gff for
UFO11282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RB | 16..1124 | 1..1090 | 97 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:40 Download gff for
UFO11282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RD | 16..1124 | 1..1090 | 97 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:11 Download gff for
UFO11282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RD | 16..1124 | 1..1090 | 97 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:11 Download gff for
UFO11282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14668499..14669100 | 32..633 | 100 | -> | Plus |
| 2R | 14669268..14669518 | 634..884 | 99 | -> | Plus |
| 2R | 14669587..14669815 | 885..1097 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:40 Download gff for
UFO11282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10556004..10556605 | 32..633 | 100 | -> | Plus |
| arm_2R | 10556773..10557023 | 634..884 | 99 | -> | Plus |
| arm_2R | 10557092..10557320 | 885..1097 | 91 | -> | Plus |
