Clone UFO11285 Report

Search the DGRC for UFO11285

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:112
Well:85
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG6043-RM
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11285.5prime Sequence

982 bp (932 high quality bases) assembled on 2012-04-16

> UFO11285.5prime
CAGTCGACATGGCCACCTCAACGCTGCAATCTCCGTCGCCGTCGCCATCA
AACGCCTCCGTGTCATCCAAGAATCCGCAGCTGAAGCGCGTAGTGTACTC
CAAATATCGGGAACTACTTGGTTCTTATAATGATAAGGCCAATGCCATCA
TCGACACTCTGCCCGCATATATGGTTCGTCAGGATCGCGGATTTCAGTTG
TCGGAGCTGCCCGTGAACGGGGATGCCAATCGCAACGGCCTGGAATTGTC
GTATGGACAGCGCGGAGGAGGCGGATCCGGAAACGGTGGCTACGAGGCGC
CCGCGTGCGTGCAGAACGCGATGATGACAAAAGACAAGAAGCCCTTCACC
TACACGCCCGGCGGCATTGATCTCTCCCAGATCCGGTCGGAGCGGATGGC
CAAGCGGTTGGCGCGCAATGCCCAATCGGAAGGAGCAACCGGAGCCGCCC
AACAGAACAGACCCGCCCAGCCACAGTCGCCAGGTGGGCCAGGTGGTGCA
GCCAGTTCGATTGGAGCCGCTGCCATGGGCATGCCGTTCCAGGTGCTGCC
GCCGCCACCACCGCCGCCGCAACCACAGTCGGGTCCAAGACCATCGGCGG
CTAGCGTTGAAAGCAGCTACAGTCCTTACACTCCGACTCCGCAAGTGCCG
CCCGTGGCCAAGAGTCCTCCGGTGCAATATCAACAGCCAACGCCACCGGC
AACACCGCCGCAGCAGCAGCAGCAACAGTCGGAGCAGCAGCCTGCAACAC
GCCCGGAGTTCCGCAGTGTGCCCATGCCCACATCGCCAGCGGAGAACGTC
TACACACGTCAATCGGGACAGTCCCAGATCGCCTTTCGAGCCGCAGCAAC
AGCAGCAGCAGCAGCAACCACAGCGAATCCACTGAGAGCCTCTTCCGGTT
TGCACAGCAGCAACAGCAACAGTCACCGCAGCAGCGTCCACCAACAGCGA
TATCGCCCGCTGGGCTCAGGTGCAGCAGCAGC

UFO11285.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG44085-RO 8804 CG44085-RO 257..1226 9..982 4740 99.4 Plus
CG44085-RM 3494 CG44085-RM 240..1209 9..982 4740 99.4 Plus
CG44085-RN 3940 CG44085-RN 257..832 9..584 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13272233..13272629 582..982 1775 98.5 Plus
2L 23513712 2L 13271296..13271629 251..584 1670 100 Plus
2L 23513712 2L 13267731..13267975 9..253 1225 100 Plus
Blast to na_te.dros performed 2014-11-28 02:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6857 835..982 207 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6887 839..982 196 63.9 Plus
roo 9092 roo DM_ROO 9092bp 1059..1160 848..954 190 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6878 839..982 188 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2424 839..954 171 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2324..2403 904..982 145 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6812 905..982 133 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6836 905..982 123 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2856 906..979 121 66.2 Plus

UFO11285.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:54 Download gff for UFO11285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6043-RJ 256..838 1..582 99 -> Plus
CG6043-RJ 1184..1579 583..982 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:07 Download gff for UFO11285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44085-RM 231..1209 1..982 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:33 Download gff for UFO11285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44085-RM 231..1209 1..982 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:33 Download gff for UFO11285.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13267722..13267972 1..250 98 -> Plus
2L 13271296..13271627 251..582 100 -> Plus
2L 13272234..13272629 583..982 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:07 Download gff for UFO11285.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13267722..13267972 1..250 98 -> Plus
arm_2L 13271296..13271627 251..582 100 -> Plus
arm_2L 13272234..13272629 583..982 98   Plus