UFO11285.5prime Sequence
982 bp (932 high quality bases) assembled on 2012-04-16
> UFO11285.5prime
CAGTCGACATGGCCACCTCAACGCTGCAATCTCCGTCGCCGTCGCCATCA
AACGCCTCCGTGTCATCCAAGAATCCGCAGCTGAAGCGCGTAGTGTACTC
CAAATATCGGGAACTACTTGGTTCTTATAATGATAAGGCCAATGCCATCA
TCGACACTCTGCCCGCATATATGGTTCGTCAGGATCGCGGATTTCAGTTG
TCGGAGCTGCCCGTGAACGGGGATGCCAATCGCAACGGCCTGGAATTGTC
GTATGGACAGCGCGGAGGAGGCGGATCCGGAAACGGTGGCTACGAGGCGC
CCGCGTGCGTGCAGAACGCGATGATGACAAAAGACAAGAAGCCCTTCACC
TACACGCCCGGCGGCATTGATCTCTCCCAGATCCGGTCGGAGCGGATGGC
CAAGCGGTTGGCGCGCAATGCCCAATCGGAAGGAGCAACCGGAGCCGCCC
AACAGAACAGACCCGCCCAGCCACAGTCGCCAGGTGGGCCAGGTGGTGCA
GCCAGTTCGATTGGAGCCGCTGCCATGGGCATGCCGTTCCAGGTGCTGCC
GCCGCCACCACCGCCGCCGCAACCACAGTCGGGTCCAAGACCATCGGCGG
CTAGCGTTGAAAGCAGCTACAGTCCTTACACTCCGACTCCGCAAGTGCCG
CCCGTGGCCAAGAGTCCTCCGGTGCAATATCAACAGCCAACGCCACCGGC
AACACCGCCGCAGCAGCAGCAGCAACAGTCGGAGCAGCAGCCTGCAACAC
GCCCGGAGTTCCGCAGTGTGCCCATGCCCACATCGCCAGCGGAGAACGTC
TACACACGTCAATCGGGACAGTCCCAGATCGCCTTTCGAGCCGCAGCAAC
AGCAGCAGCAGCAGCAACCACAGCGAATCCACTGAGAGCCTCTTCCGGTT
TGCACAGCAGCAACAGCAACAGTCACCGCAGCAGCGTCCACCAACAGCGA
TATCGCCCGCTGGGCTCAGGTGCAGCAGCAGC
UFO11285.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44085-RO | 8804 | CG44085-RO | 257..1226 | 9..982 | 4740 | 99.4 | Plus |
CG44085-RM | 3494 | CG44085-RM | 240..1209 | 9..982 | 4740 | 99.4 | Plus |
CG44085-RN | 3940 | CG44085-RN | 257..832 | 9..584 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13272233..13272629 | 582..982 | 1775 | 98.5 | Plus |
2L | 23513712 | 2L | 13271296..13271629 | 251..584 | 1670 | 100 | Plus |
2L | 23513712 | 2L | 13267731..13267975 | 9..253 | 1225 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6857 | 835..982 | 207 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6887 | 839..982 | 196 | 63.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1160 | 848..954 | 190 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6878 | 839..982 | 188 | 61.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2424 | 839..954 | 171 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2403 | 904..982 | 145 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6812 | 905..982 | 133 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6836 | 905..982 | 123 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2856 | 906..979 | 121 | 66.2 | Plus |
UFO11285.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:54 Download gff for
UFO11285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6043-RJ | 256..838 | 1..582 | 99 | -> | Plus |
CG6043-RJ | 1184..1579 | 583..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:07 Download gff for
UFO11285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44085-RM | 231..1209 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:33 Download gff for
UFO11285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44085-RM | 231..1209 | 1..982 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:33 Download gff for
UFO11285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13267722..13267972 | 1..250 | 98 | -> | Plus |
2L | 13271296..13271627 | 251..582 | 100 | -> | Plus |
2L | 13272234..13272629 | 583..982 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:07 Download gff for
UFO11285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13267722..13267972 | 1..250 | 98 | -> | Plus |
arm_2L | 13271296..13271627 | 251..582 | 100 | -> | Plus |
arm_2L | 13272234..13272629 | 583..982 | 98 | | Plus |