UFO11289.5prime Sequence
1109 bp (992 high quality bases) assembled on 2012-04-16
> UFO11289.5prime
CAGTCGACATGGATTATCGTTTGGTGCCATGTGGTTGCTGGTTGCTCCCC
CTGCTCGGCCTAGCCCTCTTCCCGTTTCCACCGGTCCACACGGCTGACGT
CACCATGGCTGACGCCGCCCACCAGGAGTTCGCCCGCCGGCTGGCCCTTT
TCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAAGCCCGGCGAGAAC
ATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGGCGATGGCCAGGCT
GGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAGGGACTGGGCTTGG
CCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCACCAGGTGCTGGCC
GCCTACCAGGACAGTCAGATCTTGCGCATCGCCAACAAGATTTTCGTCAT
GGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTGTTATCCAAGCAGT
TCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAATGTACAAGCAGCG
GCCACCATCAACAATTGGGTTGAGCAGCGCACCAACCATCTGATCAAGGA
CCTTGTGCCGGCTGATGTATTGAACTCCGAATCGCGACTCGTCCTTGTGA
ACGCCATTCACTTCAAGGGCACCTGGCAGCACCAGTTCGCCAAACACTTA
ACCCGCCCAGACACCTTTCACCTGGATGGGGAGCGAACAGTTCAGGTTCC
GATGATGAGTTTAAAGGAGCGGTTCCGCTACGCCGATCTGCCGGCGCTAG
ATGCCATGGCTCTGGAACTGCCCTACAAGGACTCAGACCTCTCTATGCTG
ATCGTACTGCCCAACACCAAGACGGGTCTGCCCGCTCTGGAGGAGAAGTT
GCGCCTCACGACCCTCTCGCAGATCACGCAGTCGTTGTACGAAACAAAGT
AGCGCTCAATTGCCCAGGTTCAAGCAGAGTTCAGTGATGTCTGAGTTTCA
GAGCTGGCATGTCAGATGTCTCGATCAGCTGATTGAAATGCTACAGTCGG
AGCAATGAAGTGTCAGCATCATACCAAGCTCATGGAGTCACGAGAGACCG
AGGCTGCGCGCCACGAATGCGGTATGCGTACTCTCAGTGCACGTCATGCC
ACCATCCTT
UFO11289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RI | 1370 | CG9453-RI | 59..1103 | 9..1024 | 4565 | 97.1 | Plus |
| Spn42Da-RF | 1669 | CG9453-RF | 59..1103 | 9..1024 | 4565 | 97.1 | Plus |
| Spn42Da-RE | 1643 | CG9453-RE | 59..1103 | 9..1024 | 4565 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877466..6878359 | 924..33 | 4370 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:02 has no hits.
UFO11289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:57 Download gff for
UFO11289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RE | 55..987 | 9..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:15 Download gff for
UFO11289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RE | 59..991 | 9..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:40 Download gff for
UFO11289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RE | 59..991 | 9..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:40 Download gff for
UFO11289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6877466..6878358 | 34..924 | 99 | <- | Minus |
| 2R | 6878845..6878869 | 9..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:15 Download gff for
UFO11289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2764971..2765863 | 34..924 | 99 | <- | Minus |
| arm_2R | 2766350..2766374 | 9..33 | 100 | | Minus |
