UFO11291.5prime Sequence
1100 bp (1008 high quality bases) assembled on 2012-04-16
> UFO11291.5prime
CAGTCGACATGAATATAGAAAAAACTATAACCTTTTCAGATCCGAAAATG
TCTGGATTGCCCACTGCCAGCATAACCGAGTGCACGGAGGACAGTAATAC
GCCAAAGCTGGCGCCGGATAAGCCATTATTGCCGGAAGAATGCGTCTCTC
CGGAGCCCAGTCGCAACCGGGAGCACTGCGATCCGCTGGACACGTCGCTG
GTGAACACCAAGCAGCGGAGATCGCGGACGAACTTCACCCTGGACCAGCT
GAACGAGCTGGAGCGACTGTTCGAGGAGACCCACTATCCAGATGCCTTCA
TGCGCGAGGAACTGAGTCAGCGACTGGGCCTCAGCGAAGCTAGAGTGCAG
GTTTGGTTTCAAAATAGAAGGGCGAAATGTAGAAAGCACGAAAACCAAAT
GCACAAAGGATTCCTCGTGGGCAGCCGGAGTCCGCCGATTGCCACTCCGC
TGGAACCATGTCGTGTGGCTCCCTACGTCAGCCTGGCCGCCCTTCGCAGC
TCATCCGTTCCATCCCATCCTGCCGCAGCGACCAGCTCGAATCCCCAGGC
ACCCGGTGTCTCCGGAACCAGCAGTTCCGGCAAGGTGGTCACCGTGGACT
CACCACATAATCACAATCCGGCGATATCGCGCTCGGCTATCAAACAGTTT
TCCAGCACCGTGGCAGCAGCCGCCGCCTTTTCCGCTTTCGATCCGGCCAT
TATTTCGGTGGCAGCTCATCAGTACGCAGCTGCTATAACTAATGGAACCG
TGCCGGCTGGATTGTTTTCTGTGCCCCAGTACTCCATAAATCTGGCCGCC
TTCGCCGCCGCCCACAGCAAGAGCTCTTCGATAGCCGATCTCCGGGATGA
AGGCCAAGAAGCACTCGGAATCGTTGGGTCTGCAGGCGGACATGGTGCTC
GCAAGCTTTCTAGACCATTCGTTTGCGCGCGGGCCCAGGTAAGTGTCATA
TCATATCATATCATAATCATATCACACTAGCTAGAGATCCTGGTCATGAC
TAGTGCTTGATCTCACCAATAAAAACGCCCGGCGCAACGAGCGTTCTGAA
CAATCAGATGACTCTGAGTCATACTGAATCTTATCAACAGGAATTCCAGC
UFO11291.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34367-RB | 1095 | CG34367-RB | 36..926 | 9..900 | 4435 | 99.9 | Plus |
| CG34367-RC | 1703 | CG34367-RC | 673..1534 | 38..900 | 4290 | 99.9 | Plus |
| CG34367-RE | 1037 | CG34367-RE | 376..868 | 407..900 | 2445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10351713..10352056 | 352..9 | 1720 | 100 | Minus |
| 2L | 23513712 | 2L | 10348660..10348977 | 722..405 | 1590 | 100 | Minus |
| 2L | 23513712 | 2L | 10348020..10348200 | 900..719 | 860 | 99.5 | Minus |
| 2L | 23513712 | 2L | 10350719..10350782 | 409..346 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:11 has no hits.
UFO11291.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:59 Download gff for
UFO11291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34367-RB | 27..926 | 1..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:19 Download gff for
UFO11291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34367-RB | 27..926 | 1..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:44 Download gff for
UFO11291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34367-RB | 27..926 | 1..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:44 Download gff for
UFO11291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10348020..10348196 | 723..900 | 99 | <- | Minus |
| 2L | 10348660..10348973 | 409..722 | 100 | <- | Minus |
| 2L | 10350720..10350777 | 351..408 | 100 | <- | Minus |
| 2L | 10351715..10352061 | 1..350 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:19 Download gff for
UFO11291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10348020..10348196 | 723..900 | 99 | <- | Minus |
| arm_2L | 10348660..10348973 | 409..722 | 100 | <- | Minus |
| arm_2L | 10350720..10350777 | 351..408 | 100 | <- | Minus |
| arm_2L | 10351715..10352061 | 1..350 | 98 | | Minus |
