UFO11292.5prime Sequence
1144 bp (1053 high quality bases) assembled on 2012-04-16
> UFO11292.5prime
CAGTCGACATGTTTTTGCGTTGGGTTATTGAAAAGCCCCCCTTTAAATTC
GATGACGATGAGGAGCACTTTAATGCTACGTTAGCGAAACTACTAAAGCC
TCGATCTGTGGGCAGCAAAGGGCATGCCGAGGTTCAAGATTTCATCGAGA
CGGAACTGAAGCGTTTGGATTTCATCACATTAAAGAATGACTTCCAACAA
GGAGTCAATATTACCAATTTGGTAGGCTTTTGGAATATGAGGGCTAAGTT
TTATCTGATGCTAACCTGTCACTACGACAGCAAAAAGCCAGAAAATGTGA
CCACCGATGAGTTCCTTGCAGCCGCAGAAGGCGCTGTATCGTGTGCCATT
CTTCTTAACGTGGCCAAAACATTGAGACAATTTTTAATAGATAGGTGGTC
TGAAAAAAAGTCCGTGGGACTGGCTTTTATCTTCTTCGACGGGCACAATT
CCTTAAGCTCAGATCCTTATGACGAAAATGAACTTTTGGGCGCAACACAC
TTTATAGATGAAGAATTTATACCTTTGCGCGACATGGCTGTTGCAGTAAC
TCTCAGCTATATTGGCGCGCCAAATCAAACCTTTTTGAGCTTCTTTGAAG
TTACCAATGATTTGCACAACCTGATTGCTGACATCGAACAGGATCTCAGA
AAATCCGGAGAACTCGACGACTGTCATGTGTTATTCCAAAAGAAAACACA
TTACGACAAAGATCTGCTTGACGATCATATTGTATTCGACGAACAAGATG
TGCCAGTCATTCATGTGAGTCCACATGAATTTCCAAATGTTCTTTATACG
CCAGCGGACAATGTCGAGAATCTACACTATCCTACCATTCGCAATATGAT
CAAAATTATTCGCTGTTTTGTGCATGATTTCTATGAAAAGTGGCAATACT
TTATGAAATGGCGACAGCTTTTGCAATAAAATATGATTTTATGATGACGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATATTCATATCATAATCACACTAGCTAGAGATCCTGGTCAT
GACTAGTGCTGAATTCCCCACCAATAAAAACGCCCGGCGGCACGGAGCGT
TTGAACATCCGAATGGATCTGAGTCATTACTGATCTATCACACA
UFO11292.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32413-RC | 996 | CG32413-RC | 52..993 | 9..948 | 4645 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5903585..5904001 | 425..9 | 2085 | 100 | Minus |
| 3L | 28110227 | 3L | 5903151..5903362 | 747..536 | 1060 | 100 | Minus |
| 3L | 28110227 | 3L | 5902899..5903094 | 940..746 | 915 | 99 | Minus |
| 3L | 28110227 | 3L | 5903416..5903527 | 537..426 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:15 has no hits.
UFO11292.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:59 Download gff for
UFO11292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32413-RC | 47..997 | 1..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:21 Download gff for
UFO11292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32413-RC | 47..997 | 1..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:45 Download gff for
UFO11292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32413-RC | 47..996 | 1..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:45 Download gff for
UFO11292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5902899..5903092 | 748..940 | 98 | <- | Minus |
| 3L | 5903151..5903361 | 537..747 | 100 | <- | Minus |
| 3L | 5903417..5903527 | 426..536 | 100 | <- | Minus |
| 3L | 5903585..5904005 | 1..425 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:21 Download gff for
UFO11292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5895999..5896192 | 748..940 | 98 | <- | Minus |
| arm_3L | 5896251..5896461 | 537..747 | 100 | <- | Minus |
| arm_3L | 5896517..5896627 | 426..536 | 100 | <- | Minus |
| arm_3L | 5896685..5897105 | 1..425 | 99 | | Minus |
