UFO11293.5prime Sequence
1087 bp (985 high quality bases) assembled on 2012-04-16
> UFO11293.5prime
CAGTCGACATGAAGTATTCAACAAGTCGAATAAACATTCTGTGCCTGCTG
GGATTGTGCCTACTGCTTTTTAAAACAGCACCCACAGAGGCACAAAACAA
ACGAACCTCGCGCGTAACCAGCTCCCGCAGCTTCGGGACCAACATCAAGA
CCGACACTTCCAATGGCCCTAGCTTCGACTGCCCTGAGGAGTTCGGATAC
TATCCGCACCCATCGGATTGCACCCAATACTACGTGTGCGTCTTTGGAGG
AGCGCTGCTTGAAAGTTGCACTGGCGGCTTGATGTACTCGCACGACCTGC
AGACCTGCGACTGGCCGCGAAACGTCGGCTGCGAGTTGGCGGACACATCC
TCCGAGCGCAACCTTGCACAAAGCCAGGTCCAGAGGCAAAGAGAACCCCA
TGCACAGCACGTGCCAAGCCGAGTACGTTTTGGAGCCGCTTTCAGCAGTC
AGGGTGGCACACAGAAGACGGCCACAGTGCCGCCACAGTACCATCGTTCT
CCACCACAGGTAATACAGGCGCAGGTGCAGAATATACCTCCTCCCCCACC
GGAGCTGCGAGTGTCACCAAACCCGGTAATCACGTCGCGTGGTCAACCAA
AACCGCTGATCGACTCCCAGGAGGACATTGCAAAGCTGTATGCTGATGCG
CAGGAATCATTGCCGCCTGTGGAAGAAGAGGAGTCCGACCGTCAGCAGAG
AGTGTATCGAGGCCAACCCAGTACCGTTAGTCAAGTTCAACGCGATCGCG
ATGGTATTATTCACCAAGCTAGTATTAATTCTATTCCTCAAACTGGAAAA
ATCGGATCTTACGCTTTTGGAACCGCCTATAGAGTTGAGTCGCCTTCACC
GTCATCGCTAGGGACACCGCAACCCGCTAATATATTTGTACAGCCCACGT
CAGCAGCCCCGCGCAACAGTCAGAGCCCAATCGTACTACTACATGCATCT
ACATTTATCATGGGGGCAGCTACACACAGCAGCAAACACACACAGCACAC
ACTCATCACCAGCGCACCACAAGAACACATCAGCAGCAGCCAGCCACACA
TCCATGGACATCTATTATCGTACGACGACGATTCGAT
UFO11293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda5-RE | 4347 | CG31973-RE | 106..1090 | 9..986 | 4760 | 99.3 | Plus |
| Cda5-RI | 7266 | CG31973-RI | 595..1579 | 9..986 | 4760 | 99.3 | Plus |
| Cda5-RH | 3917 | CG31973-RH | 123..1107 | 9..986 | 4760 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 39301..39859 | 635..77 | 2795 | 100 | Minus |
| 2L | 23513712 | 2L | 38535..38733 | 832..634 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 35068..35214 | 973..831 | 535 | 97.3 | Minus |
| 2L | 23513712 | 2L | 58081..58150 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:20 has no hits.
UFO11293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:42:00 Download gff for
UFO11293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda5-RB | 79..1054 | 1..973 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:22 Download gff for
UFO11293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda5-RH | 116..1091 | 1..973 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:47 Download gff for
UFO11293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda5-RH | 116..1091 | 1..973 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:47 Download gff for
UFO11293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 35068..35212 | 833..973 | 97 | <- | Minus |
| 2L | 38535..38731 | 636..832 | 100 | <- | Minus |
| 2L | 39301..39857 | 79..635 | 100 | <- | Minus |
| 2L | 58081..58157 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:22 Download gff for
UFO11293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 35068..35212 | 833..973 | 97 | <- | Minus |
| arm_2L | 38535..38731 | 636..832 | 100 | <- | Minus |
| arm_2L | 39301..39857 | 79..635 | 100 | <- | Minus |
| arm_2L | 58081..58157 | 1..78 | 94 | | Minus |
