Clone UFO11294 Report

Search the DGRC for UFO11294

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:112
Well:94
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG40470-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11294.5prime Sequence

1145 bp (1038 high quality bases) assembled on 2012-04-16

> UFO11294.5prime
CAGTCGACATGCGTAGTGCTATTTATAATTTCTTCATATACATATGTTCC
TCGATGGCTAGTGGTACACGAACCCTATTTATACTGACAATACTTCTAAC
TGCGCCTGGATTAGAGGCGTTTGTCAATGACTTTTCTTCACTTCACGTAA
TATCAGAGGTTCGCCTGCCTAAGGAAGTTTTGCCTCTAAGCTATGAAGTC
CTCATTGAACCGCATATGGATAACCAAAACTTTGAAGGATCAATAAGAAT
GCACTTAAGATGGATTGGAGATTCAAAAAAGGTGTATTTCCATGCACATG
ACACTTTGTTGATCGACGTCAGCCAAATCAATTTAACTACATTAAATATG
GGAGATGGGACGTTGGACAAAAATGTAATAATTTTAAGGGGCGTCCGACT
GCCTCGAAAGCCTGTATTTGTTTTGTACCTAAAAGATAAAATAAAAAAGG
GCTCGGAATGTCTTTTAGACATTTATTTTCAAGGAAATATTTCAGAAACT
GAGGAAGGCCTTTTTAGAAGCTATTACACCAATTCTGGCAACGATGGCGA
AGAAATATATTTAGCTACAAACCTTAAACCAAACAATGCACGCCGATTAT
TTCCATGCTTTGATGAACCAGGAATAAAGGTCCCATTCAATGTGTCAATT
GCAAGACCTAAAGGTTATATTACACTATTTAATACGCCTCTGCATAATAC
AATAAATCATCCTAAATTACGTAGTTACAGCTTGGATTTTTTTCATACCA
CTGCGCCAATGTCTACACATGCTTTTGGCTTTGTAATATTAAAACTGCAT
ATGTGGAACGAACATAAAATTGTAAAATCTTCAGATATTCCTGCCATAAA
TATATGGAGCAATAACCCTCTCATCAACCAATTTATTGGATATCCAAAAC
AAACTTAATGTTGCACATACTACAATTCAACATTTTTTAATATCCCGCTC
CCTTTAACTAAGCTTGATGTTATCGCGATACCTAGTCTGCACACTTCCAT
TTATTAGCGCAGTGGTATCTGATAGCTAGAGATCTTGAAATCTAAGAAGA
ATGTTATTTCGAATATTCGCGGGACTAATTTATCATGAATTGGTATATGG
ATAACGCCTGAATGGTGAACTGATGTCTTATGTGAAATAAGGCGC

UFO11294.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG40470-RA 2990 CG40470-RA 103..1243 9..1145 5200 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23934553..23934826 631..358 1370 100 Minus
3L 28110227 3L 23934879..23935123 359..115 1225 100 Minus
3L 28110227 3L 23912277..23912455 889..710 850 99.4 Minus
3L 28110227 3L 23890081..23890207 1011..888 490 96.1 Minus
3L 28110227 3L 23934415..23934496 709..628 410 100 Minus
3L 28110227 3L 23974597..23974661 117..53 325 100 Minus
3L 28110227 3L 23986264..23986308 53..9 225 100 Minus
3L 28110227 3L 23889913..23889965 1125..1074 185 94.3 Minus
Blast to na_te.dros performed on 2014-11-28 02:34:33 has no hits.

UFO11294.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:53 Download gff for UFO11294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40470-RA 77..1223 1..1145 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:04 Download gff for UFO11294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40470-RA 97..1243 1..1145 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:30 Download gff for UFO11294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40470-RA 97..1243 1..1145 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:30 Download gff for UFO11294.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 23890061..23890206 889..1029 96 <- Minus
3L 23912278..23912455 710..888 99 <- Minus
3L 23934415..23934494 630..709 100 <- Minus
3L 23934555..23934825 359..629 100 <- Minus
3L 23934880..23935121 117..358 100 <- Minus
3L 23974598..23974660 54..116 100 <- Minus
3L 23986264..23986313 1..53 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:04 Download gff for UFO11294.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23883161..23883306 889..1029 96 <- Minus
arm_3L 23905378..23905555 710..888 99 <- Minus
arm_3L 23927515..23927594 630..709 100 <- Minus
arm_3L 23927655..23927925 359..629 100 <- Minus
arm_3L 23927980..23928221 117..358 100 <- Minus
arm_3L 23967698..23967760 54..116 100 <- Minus
arm_3L 23979364..23979413 1..53 92   Minus