UFO11294.5prime Sequence
1145 bp (1038 high quality bases) assembled on 2012-04-16
> UFO11294.5prime
CAGTCGACATGCGTAGTGCTATTTATAATTTCTTCATATACATATGTTCC
TCGATGGCTAGTGGTACACGAACCCTATTTATACTGACAATACTTCTAAC
TGCGCCTGGATTAGAGGCGTTTGTCAATGACTTTTCTTCACTTCACGTAA
TATCAGAGGTTCGCCTGCCTAAGGAAGTTTTGCCTCTAAGCTATGAAGTC
CTCATTGAACCGCATATGGATAACCAAAACTTTGAAGGATCAATAAGAAT
GCACTTAAGATGGATTGGAGATTCAAAAAAGGTGTATTTCCATGCACATG
ACACTTTGTTGATCGACGTCAGCCAAATCAATTTAACTACATTAAATATG
GGAGATGGGACGTTGGACAAAAATGTAATAATTTTAAGGGGCGTCCGACT
GCCTCGAAAGCCTGTATTTGTTTTGTACCTAAAAGATAAAATAAAAAAGG
GCTCGGAATGTCTTTTAGACATTTATTTTCAAGGAAATATTTCAGAAACT
GAGGAAGGCCTTTTTAGAAGCTATTACACCAATTCTGGCAACGATGGCGA
AGAAATATATTTAGCTACAAACCTTAAACCAAACAATGCACGCCGATTAT
TTCCATGCTTTGATGAACCAGGAATAAAGGTCCCATTCAATGTGTCAATT
GCAAGACCTAAAGGTTATATTACACTATTTAATACGCCTCTGCATAATAC
AATAAATCATCCTAAATTACGTAGTTACAGCTTGGATTTTTTTCATACCA
CTGCGCCAATGTCTACACATGCTTTTGGCTTTGTAATATTAAAACTGCAT
ATGTGGAACGAACATAAAATTGTAAAATCTTCAGATATTCCTGCCATAAA
TATATGGAGCAATAACCCTCTCATCAACCAATTTATTGGATATCCAAAAC
AAACTTAATGTTGCACATACTACAATTCAACATTTTTTAATATCCCGCTC
CCTTTAACTAAGCTTGATGTTATCGCGATACCTAGTCTGCACACTTCCAT
TTATTAGCGCAGTGGTATCTGATAGCTAGAGATCTTGAAATCTAAGAAGA
ATGTTATTTCGAATATTCGCGGGACTAATTTATCATGAATTGGTATATGG
ATAACGCCTGAATGGTGAACTGATGTCTTATGTGAAATAAGGCGC
UFO11294.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40470-RA | 2990 | CG40470-RA | 103..1243 | 9..1145 | 5200 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23934553..23934826 | 631..358 | 1370 | 100 | Minus |
3L | 28110227 | 3L | 23934879..23935123 | 359..115 | 1225 | 100 | Minus |
3L | 28110227 | 3L | 23912277..23912455 | 889..710 | 850 | 99.4 | Minus |
3L | 28110227 | 3L | 23890081..23890207 | 1011..888 | 490 | 96.1 | Minus |
3L | 28110227 | 3L | 23934415..23934496 | 709..628 | 410 | 100 | Minus |
3L | 28110227 | 3L | 23974597..23974661 | 117..53 | 325 | 100 | Minus |
3L | 28110227 | 3L | 23986264..23986308 | 53..9 | 225 | 100 | Minus |
3L | 28110227 | 3L | 23889913..23889965 | 1125..1074 | 185 | 94.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:34:33 has no hits.
UFO11294.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:53 Download gff for
UFO11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40470-RA | 77..1223 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:04 Download gff for
UFO11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40470-RA | 97..1243 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:30 Download gff for
UFO11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40470-RA | 97..1243 | 1..1145 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:30 Download gff for
UFO11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23890061..23890206 | 889..1029 | 96 | <- | Minus |
3L | 23912278..23912455 | 710..888 | 99 | <- | Minus |
3L | 23934415..23934494 | 630..709 | 100 | <- | Minus |
3L | 23934555..23934825 | 359..629 | 100 | <- | Minus |
3L | 23934880..23935121 | 117..358 | 100 | <- | Minus |
3L | 23974598..23974660 | 54..116 | 100 | <- | Minus |
3L | 23986264..23986313 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:04 Download gff for
UFO11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23883161..23883306 | 889..1029 | 96 | <- | Minus |
arm_3L | 23905378..23905555 | 710..888 | 99 | <- | Minus |
arm_3L | 23927515..23927594 | 630..709 | 100 | <- | Minus |
arm_3L | 23927655..23927925 | 359..629 | 100 | <- | Minus |
arm_3L | 23927980..23928221 | 117..358 | 100 | <- | Minus |
arm_3L | 23967698..23967760 | 54..116 | 100 | <- | Minus |
arm_3L | 23979364..23979413 | 1..53 | 92 | | Minus |