UFO11296.5prime Sequence
779 bp (779 high quality bases) assembled on 2012-04-16
> UFO11296.5prime
CAGTCGACATGCGGATAAATCACCAATGGATATACTATGCGATCTTGTCT
CTCTGCTGGTTTAATAAAGCTACTCTGGGCGCCATTCTGGACTCACGTTG
TTACCTGGAGGGCGGAGGTTCCGCGGAAAGTTTTCTTGCCACCGAGGATT
TGGCGGTGGGCTCCATAATCGGCAAGCTGCGGATCAATGGGGATGCCAAT
GCCGAAACAGGCGACATCAATCTTTCATTGAGGGAAAAGAATGCACCAGT
TGAGATTCATCCCGGCACCAAGGAGCTAGCCCTATCGGTGGAACTGGACA
AGGAGGGTGTGAGAGGACCATCGTCCATTTACGTGAATGTGATCTGCATA
CGACGGCATTCAACGGATCCGAGCTTCGTCATTCCCGTTAACGTGCGAGT
AACTGATGTGAATGACAATGCCCCCCAGTGGATCGGAACGCCCTACACTC
TAACTCTTTCGGAGGTGACCGTTCCGGGCACTAGAATCCTGCAGGGCGCC
CGTGCCGAGGATGCCGACCAACCGGGTCCCTTCTCTACGGTGGAGTACCA
GGTGCTGCCAGGACCGTACTCGGAGTACGTGCAGTTTCTCAATCCTCTGG
AAGGCACGCTGGTGCTAAAGAAAGCCCTCGACTACGAACAGCTTTCAGAA
TTTTCACGGTGAAGCTGAGGGCGCAGGATCAAGGAAACACCGCCACGTCA
CTCGGACACGTTGCTGCGGGTGGTCATCACGGATGCGGATGATCAGAACC
CAAATTTCAGCGAGAGTCCTACAAGCGCT
UFO11296.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cad96Cb-RD | 3003 | CG13664-RD | 407..1174 | 9..779 | 3705 | 99.1 | Plus |
| Cad96Cb-RB | 3016 | CG13664-RB | 429..1196 | 9..779 | 3705 | 99.1 | Plus |
| Cad96Cb-RC | 2991 | CG13664-RC | 407..1174 | 9..779 | 3705 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25226224..25226624 | 773..371 | 1790 | 98.5 | Minus |
| 3R | 32079331 | 3R | 25227845..25228148 | 371..68 | 1520 | 100 | Minus |
| 3R | 32079331 | 3R | 25230633..25230693 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:34:37 has no hits.
UFO11296.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:54 Download gff for
UFO11296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Cb-RB | 407..1174 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:05 Download gff for
UFO11296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Cb-RC | 407..1174 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:32 Download gff for
UFO11296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Cb-RC | 407..1174 | 9..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:32 Download gff for
UFO11296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25226219..25226623 | 372..779 | 98 | <- | Minus |
| 3R | 25227845..25228146 | 70..371 | 100 | <- | Minus |
| 3R | 25230633..25230693 | 9..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:05 Download gff for
UFO11296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21051941..21052345 | 372..779 | 98 | <- | Minus |
| arm_3R | 21053567..21053868 | 70..371 | 100 | <- | Minus |
| arm_3R | 21056355..21056415 | 9..69 | 100 | | Minus |
