UFO11302.5prime Sequence
1058 bp (1012 high quality bases) assembled on 2012-04-23
> UFO11302.5prime
CAGTCGACATGAAGTACTCTACCTTGCTAATTCTGGGCCTAATTTTGACC
GTGGCTCTCATGAGCGAGGCCAAGTCCAAGTCCAAAAAGCAGAAGAATAA
GCAGAATGGAATCCTGCCAATGGCCGAACCCTGCAAACCCAGCAAGTGCA
AATTACCCGATTGCCGCTGCTCCGATGCCGCTTTACCCACATCCAAGTTC
CAGGGCAAGGAGAACCAGATTCCGCAGTTCGTGACCATCACTTTCGATGA
CGCTGTAAATGCTGTCAACTTTGCCCAGTACGAGCTGCTTTTCGATGGAT
TAATCAATCCAGATGGTTGTGGAGCCGCCGGTACCTTCTTTTTGTCCCAC
GAATACACGGATTACGTGAGGGTGAATGCACTCTATAGGGCCGGTCACGA
GATAGCCCTACATTCGGTGACCCATGGAGATGGCACCGATTACTGGCGTT
CAGCTGATGTTCCGACCATCGAGCGAGAGTTTGGAGCGCAGCTCAAAATG
TTAGAGACCTTTGCCAAAGTAAATCCCAAGAAGATACAGGGAATGCGCCT
GCCGTTCCTCCAAATTTCGGGCAATAACACCTTTGAAGCAGCCCGTCGCT
TGGGCTTGACCTACGACAGTTCCTGGCCAACGCAAAAGTTCAAGGATCCG
GCCATGTGGCCGTACACCCTGGACTACAAGTCTAAGCAGGACTGTCAAAT
AGGCCCCTGTCCAGAGGCATCCATTCCCGGATTCTGGGTGAATCCCATGG
TCACGTGGACCGATACTGAGGGCTACAGTTGCTCCATGATCGATGCTTGC
GTTTACCCGCCGGAGACGATATGGACGAGCTGTTCGACTGGATGATGGAG
ACTTCATAGGCACTATCTGGCAATAGAGCAACCCTTCGGGATGTATCTGC
ATGCTGCGTGTTTTCGCGGGGTCGCAATTACTTGGTGCCTTTTAAAAATT
CATTAACCACCTGAACACCTATTCGGATGTGTATTTCACCGGAATTTCGC
GATTGTGGAGTACGTGAGAAAGCGACGCCTGGCCTCCCCGTTCAAGGACT
GGTCCGAA
UFO11302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda9-RB | 1637 | CG15918-RB | 353..1402 | 8..1051 | 4965 | 98.8 | Plus |
| Cda9-RA | 1306 | CG15918-RA | 22..1071 | 8..1051 | 4965 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17129155..17129882 | 225..947 | 3280 | 98.9 | Plus |
| 2R | 25286936 | 2R | 17128832..17129051 | 8..227 | 1100 | 100 | Plus |
| 2R | 25286936 | 2R | 17129995..17130099 | 948..1051 | 370 | 92.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:35:29 has no hits.
UFO11302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:27:58 Download gff for
UFO11302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda9-RA | 1..1055 | 9..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:27 Download gff for
UFO11302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda9-RA | 13..1077 | 1..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:50 Download gff for
UFO11302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda9-RA | 13..1077 | 1..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:50 Download gff for
UFO11302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17128823..17129051 | 1..227 | 98 | -> | Plus |
| 2R | 17129158..17129882 | 228..947 | 98 | -> | Plus |
| 2R | 17129995..17130105 | 948..1058 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:27 Download gff for
UFO11302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13016328..13016556 | 1..227 | 98 | -> | Plus |
| arm_2R | 13016663..13017387 | 228..947 | 98 | -> | Plus |
| arm_2R | 13017500..13017610 | 948..1058 | 92 | | Plus |
