UFO11304.5prime Sequence
1099 bp (904 high quality bases) assembled on 2012-04-23
> UFO11304.5prime
CAGTCGACATGCTCTTCCTATTTGGCTTTGCTAGTTCCTGGGCCGCAGAC
TACGAGCTGTTGCTGGAGGACCCTCATATCTTTTCACCCTGCACTGAACC
GCCGCCGGGATCGATTGGATTCCACGATGCCTTCGATATTGGCGATCTGG
TAGTCGACCAGGACATGGACATCATTCACCTGTCCGAGAGTGTCACCTCA
ATCTGGGATGTGGAGCCCACAGATCGCATATCCGCCAGGTTTGCAATAAT
GCATTACAACCGCGGCAGCTGGGAACCGACTGTATTTAGCATGGCCACGC
CGGACTTCTGCGCCTCAATGTTTGATGAGAATCAGTCGTGGTTTAAGTAC
TGGACCAAACACATTTCGAACCGCGATGAGGTGATGGAGAAGTGTTTTAA
AACGCGTGGTACCGTTATAATGCACAATCCATTCGATCTGCAGCTGCGTC
TAACGGACATTCGTGGTGCAACTCTCAGGGGTCGTTACAAAGCTGTGGTC
ACCTTTGAGGCGGTCGATGAGAAGGATGTGCCACGCCGTAATTCCATTTG
CTTCGAAATCAGGGGAGAGGCCGAGAAGATAAATGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCTGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAG
CGAGCTTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAGCATTCTGCCGACTGGAAAGCCATCACAAACGGCATG
ATGAACTTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGGCGTATAA
TTTTTGGCTCATGTGAAAACGGGGGCGAAGAAGTTGTCCATAATTGCCCC
GTTAAATCAAACTGGTGAAACTCACCCAGGATGGCCTGAAACGAAAAACT
ATTTCTTCATTATCCTTTAGGAAATAGCCAGGCTTTCCCCGGTAACCGC
UFO11304.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheB42c-RB | 1649 | CG33350-RB | 990..1566 | 8..584 | 2840 | 99.5 | Plus |
| CheB38c-RA | 659 | CG14405-RA | 265..360 | 258..353 | 180 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6945173..6945399 | 234..8 | 1090 | 98.7 | Minus |
| 2R | 25286936 | 2R | 6944941..6945117 | 410..234 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 6944697..6944870 | 584..411 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:33 has no hits.
UFO11304.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:27:58 Download gff for
UFO11304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42c-RA | 6..590 | 4..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:30 Download gff for
UFO11304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42c-RB | 987..1571 | 4..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:51 Download gff for
UFO11304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42c-RB | 987..1571 | 4..592 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:51 Download gff for
UFO11304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6944692..6944870 | 411..592 | 97 | <- | Minus |
| 2R | 6944941..6945117 | 234..410 | 100 | <- | Minus |
| 2R | 6945174..6945402 | 4..233 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:30 Download gff for
UFO11304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2832197..2832375 | 411..592 | 97 | <- | Minus |
| arm_2R | 2832446..2832622 | 234..410 | 100 | <- | Minus |
| arm_2R | 2832679..2832907 | 4..233 | 97 | | Minus |
