UFO11305.5prime Sequence
1102 bp (981 high quality bases) assembled on 2012-04-23
> UFO11305.5prime
CAGTCGACATGTCAGCATGGAAGATAGCCCCGTGTCGAGCACCGGGTATC
CCCAAATTGGATGAGCAGGAGGAGAGCGACCTGGTGTCCAGCGGCATAGA
TCCCAGCGACGCAGAGGAGGAAACCGATCTGGATGCCGCCTACGATGAGC
TGGAGGAGATGAAGCAGCGTCTGATCACACTGCGTAATAAGATAATAATC
ACAAATCCAGATGCGTGCCAGGATCTAAAAATTCGGGATCTCTGGACCCC
AGAGGGCGGGGAACTGCAGGAGTTGCGTGACCAGAAGTGCCAACTTATTT
GCCAACTTCAAGAGGCAACCCAGCACCTGAAGGACTCCCAAAATGAGCTC
AAGGAACTGGAGACTTGGCGATGCCACCTCCAATTACGCATCCATCAGGC
AAAGCGGCAGCTTAGTCAGTTCGAGAACTTCAAACTGAAGGTTATCCACC
AATTCGGGCTGTGCATCGAGCGTTGGGAGAACCAGAAGACATGCAAACTG
GACTGCACCACGTACCGCAAGGAAATGGCGGCCCACATCCTTCACGCGGA
CAACTCCCGAAAGAGCGTGGTGTACCAAAAATGCCACAAGTCCTACAGAC
GCCGCATCCGCGTCGAGCTTATGCTGGTCCGCGTTTTCCTGCACAATCTC
TTCGAGGCGATGGTCAACGACTTTAGGTTCTTTAGCCGCCACATGAGCAT
TAACTTCTCCGTTGGATCCACAGACCACACAGTTCCGGAAACTCCAATCA
ACACTGTTTCTTCTTCCGACCAGGAGAGCCGCAAAGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGCCAACCGAGCGTTCTGAAC
AAATCCAATGGAGTTCTGAGGTCATTACTGGATTTTATCACAGGAGTCCA
AGCGAGCTCGATATTCAAATTACGCCCGCCTTGCCACTCATCGCGGTACC
GTTGTATTCATAGCCATCTGCGACTGAGGCCATCCAACGCATGTATGACA
TG
UFO11305.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12831-RC | 3601 | CG12831-RC | 257..1034 | 8..785 | 3890 | 100 | Plus |
| CG12831-RB | 1051 | CG12831-RB | 257..1034 | 8..785 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7073201..7073896 | 703..8 | 3480 | 100 | Minus |
| 2R | 25286936 | 2R | 7073062..7073143 | 785..704 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:37 has no hits.
UFO11305.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:27:59 Download gff for
UFO11305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12831-RB | 215..1006 | 1..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:32 Download gff for
UFO11305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12831-RB | 215..1006 | 1..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:53 Download gff for
UFO11305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12831-RB | 251..1042 | 1..793 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:53 Download gff for
UFO11305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7073054..7073143 | 704..793 | 95 | <- | Minus |
| 2R | 7073201..7073899 | 1..703 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:32 Download gff for
UFO11305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2960559..2960648 | 704..793 | 95 | <- | Minus |
| arm_2R | 2960706..2961404 | 1..703 | 99 | | Minus |
