Clone UFO11307 Report

Search the DGRC for UFO11307

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:113
Well:7
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG31262-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11307.5prime Sequence

750 bp (750 high quality bases) assembled on 2012-04-23

> UFO11307.5prime
CAGTCGACATGGACAACTACAGATTCGGCACAGTGGACTACTTAGTGTTA
GTGGCCATGACGTTATTATCCACGGGAACGGGAATATATTTCGGTGCCTT
AAAGAAAAAACATAAAAACAAGAAAAGTGTTTCAGAAGACAATAGAAGGA
CCAATTTTGGATCTGAGAAGATAGATGAGTATCTTATGGGTTCTCGAAAT
ATGAAAGTGATCCCAGTATCCATCACTTTGTATCGGGTAACTTCCATCAT
TGGAACTCCCTCTGAGATCTATCATTATGGCACCCAGTACTATCTCATTA
TCGTAGCCATTATTCTTCAAGGAATAGCCTTCTCCTATGTATACTTACCA
GTGTACTCAGCTCTGCAAATTGGATCTGCATACGAGTACTTGGGATTGCG
ATTCAACTCGATTATTAGGACCACAGCATCTTTTATGTATGTTTTTGGTA
TTCTTACTTACTTGCCATTCATTGTATATGTTCCGGCATTATCGTTAAGC
CAGGTTTCTGGTCTCAATACCCATCTGATTGGACTGGTAATCATACTCGC
TTGCGTCACCTACACATTTATGGGTGGCCTGAAGGCTGTGGTCCACACGG
ATGTTTGGCAAGTGGCTGTTATGTTTCTCTCCCTGGTTGCGGTTGCCTTT
TTGGCCATATACTACTCTAATGGCTTGTTAGCTGTATTCGACGACGCGGA
ACAGGGTGGACGATTGATGCTGGCCAACACGAATCCATCTCCCCAATGTT

UFO11307.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31262-RB 2163 CG31262-RB 302..1036 9..743 3660 99.9 Plus
CG31262-RE 1988 CG31262-RE 127..861 9..743 3660 99.9 Plus
CG31262-RF 2001 CG31262-RF 127..874 9..743 3520 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17218352..17218523 743..572 845 99.4 Minus
3R 32079331 3R 17218931..17219091 386..226 805 100 Minus
3R 32079331 3R 17219161..17219282 225..104 610 100 Minus
3R 32079331 3R 17219337..17219432 104..9 480 100 Minus
3R 32079331 3R 17218576..17218645 573..504 350 100 Minus
3R 32079331 3R 17218811..17218878 452..385 340 100 Minus
3R 32079331 3R 17218703..17218754 504..453 260 100 Minus
Blast to na_te.dros performed 2014-11-28 02:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1277..1346 97..166 107 61.4 Plus

UFO11307.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:00 Download gff for UFO11307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31262-RB 302..1042 9..750 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:34 Download gff for UFO11307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31262-RE 127..867 9..750 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:54 Download gff for UFO11307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31262-RE 127..867 9..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:54 Download gff for UFO11307.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17218346..17218522 573..750 98 <- Minus
3R 17218577..17218644 505..572 100 <- Minus
3R 17218703..17218754 453..504 100 <- Minus
3R 17218811..17218876 387..452 100 <- Minus
3R 17218931..17219091 226..386 100 <- Minus
3R 17219161..17219282 104..225 100 <- Minus
3R 17219338..17219432 9..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:34 Download gff for UFO11307.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13044068..13044244 573..750 98 <- Minus
arm_3R 13044299..13044366 505..572 100 <- Minus
arm_3R 13044425..13044476 453..504 100 <- Minus
arm_3R 13044533..13044598 387..452 100 <- Minus
arm_3R 13044653..13044813 226..386 100 <- Minus
arm_3R 13044883..13045004 104..225 100 <- Minus
arm_3R 13045060..13045154 9..103 100   Minus