UFO11307.5prime Sequence
750 bp (750 high quality bases) assembled on 2012-04-23
> UFO11307.5prime
CAGTCGACATGGACAACTACAGATTCGGCACAGTGGACTACTTAGTGTTA
GTGGCCATGACGTTATTATCCACGGGAACGGGAATATATTTCGGTGCCTT
AAAGAAAAAACATAAAAACAAGAAAAGTGTTTCAGAAGACAATAGAAGGA
CCAATTTTGGATCTGAGAAGATAGATGAGTATCTTATGGGTTCTCGAAAT
ATGAAAGTGATCCCAGTATCCATCACTTTGTATCGGGTAACTTCCATCAT
TGGAACTCCCTCTGAGATCTATCATTATGGCACCCAGTACTATCTCATTA
TCGTAGCCATTATTCTTCAAGGAATAGCCTTCTCCTATGTATACTTACCA
GTGTACTCAGCTCTGCAAATTGGATCTGCATACGAGTACTTGGGATTGCG
ATTCAACTCGATTATTAGGACCACAGCATCTTTTATGTATGTTTTTGGTA
TTCTTACTTACTTGCCATTCATTGTATATGTTCCGGCATTATCGTTAAGC
CAGGTTTCTGGTCTCAATACCCATCTGATTGGACTGGTAATCATACTCGC
TTGCGTCACCTACACATTTATGGGTGGCCTGAAGGCTGTGGTCCACACGG
ATGTTTGGCAAGTGGCTGTTATGTTTCTCTCCCTGGTTGCGGTTGCCTTT
TTGGCCATATACTACTCTAATGGCTTGTTAGCTGTATTCGACGACGCGGA
ACAGGGTGGACGATTGATGCTGGCCAACACGAATCCATCTCCCCAATGTT
UFO11307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31262-RB | 2163 | CG31262-RB | 302..1036 | 9..743 | 3660 | 99.9 | Plus |
CG31262-RE | 1988 | CG31262-RE | 127..861 | 9..743 | 3660 | 99.9 | Plus |
CG31262-RF | 2001 | CG31262-RF | 127..874 | 9..743 | 3520 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17218352..17218523 | 743..572 | 845 | 99.4 | Minus |
3R | 32079331 | 3R | 17218931..17219091 | 386..226 | 805 | 100 | Minus |
3R | 32079331 | 3R | 17219161..17219282 | 225..104 | 610 | 100 | Minus |
3R | 32079331 | 3R | 17219337..17219432 | 104..9 | 480 | 100 | Minus |
3R | 32079331 | 3R | 17218576..17218645 | 573..504 | 350 | 100 | Minus |
3R | 32079331 | 3R | 17218811..17218878 | 452..385 | 340 | 100 | Minus |
3R | 32079331 | 3R | 17218703..17218754 | 504..453 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1277..1346 | 97..166 | 107 | 61.4 | Plus |
UFO11307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:00 Download gff for
UFO11307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31262-RB | 302..1042 | 9..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:34 Download gff for
UFO11307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31262-RE | 127..867 | 9..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:54 Download gff for
UFO11307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31262-RE | 127..867 | 9..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:54 Download gff for
UFO11307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17218346..17218522 | 573..750 | 98 | <- | Minus |
3R | 17218577..17218644 | 505..572 | 100 | <- | Minus |
3R | 17218703..17218754 | 453..504 | 100 | <- | Minus |
3R | 17218811..17218876 | 387..452 | 100 | <- | Minus |
3R | 17218931..17219091 | 226..386 | 100 | <- | Minus |
3R | 17219161..17219282 | 104..225 | 100 | <- | Minus |
3R | 17219338..17219432 | 9..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:34 Download gff for
UFO11307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13044068..13044244 | 573..750 | 98 | <- | Minus |
arm_3R | 13044299..13044366 | 505..572 | 100 | <- | Minus |
arm_3R | 13044425..13044476 | 453..504 | 100 | <- | Minus |
arm_3R | 13044533..13044598 | 387..452 | 100 | <- | Minus |
arm_3R | 13044653..13044813 | 226..386 | 100 | <- | Minus |
arm_3R | 13044883..13045004 | 104..225 | 100 | <- | Minus |
arm_3R | 13045060..13045154 | 9..103 | 100 | | Minus |