UFO11308.5prime Sequence
842 bp (789 high quality bases) assembled on 2012-04-23
> UFO11308.5prime
CAGTCGACATGACAATCGAATGGGCTCCTCTCCGGGTTCCGCTGGAACGG
CGGCTTCAGACCCTGGTTACGTCATTCTTCACCTATACCTTCTTTACGCT
GCCCATCTCGTCCTGCCTCGCAGTAGCTATCCTGCTGTACTACGGCGAAA
TGTTTGTGCGTAGTCTGCTTCTTATCTATTTTGTGAAAATTTATTTGGAT
TATAAAAGAAATTACGGCATTATGGAAGGTAATGGTTGGTTATTCTACCG
CAGCAATTGGAGATATCGAAACTACTTCCCCGTCGAACTTGTAAAAACCG
CCGAGCTGCCTCCCAACAGGAACTATATCGTAGCAAGCTTTCCACACGGA
ATACTTGGTACTGGAACTTGCATTAACATGAGCCTGGACATCGACAATTG
GCTATCCCTTTACCCGCACGTTCGACCCAAGATCGCCACCCTGGATCATC
ACTTCAAGACGCCCTTTCCTGCGTGACATATTGCGCTGGTGGGGCATGGT
ATCGGTTTCCAAGGAATCCCTGTCCTATTTACTCAGCAAGTCAAATGATC
CAAATGCACAAGGATAATCGGGATGGTTTCACATCCAATGCGGTGGCCGT
ACTTGTTGGTGGCGCCAAGGAAGCCATGGATTCGCATCCGGGACAGTACA
TTTTGACCCCTCAGGGATAGAAAGGGTTTCGTCAAAATGGCTGTTCGAAC
CGGATCGTCGATTGTGCCCTCGTTGTCTTTGGCGAGGTGGACATATTTGA
TCAGGTGGCTAATCCTCCGGACTTCATCGCTCCGTCGCTTTCAAGAATGT
GGTCAAGAAATTCACAGGCATTTCACCGCTTTCTTCCCAAGG
UFO11308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1946-RA | 1189 | CG1946-RA | 60..889 | 8..842 | 3945 | 98.7 | Plus |
| CG1942-RA | 1305 | CG1942-RA | 458..990 | 273..809 | 680 | 76.1 | Plus |
| CG1941-RD | 1203 | CG1941-RD | 328..857 | 264..796 | 505 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7715878..7716220 | 358..703 | 1565 | 98.8 | Plus |
| 2R | 25286936 | 2R | 7714982..7715111 | 8..137 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 7715700..7715823 | 235..358 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 7715531..7715629 | 137..235 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 7716278..7716404 | 703..830 | 465 | 96.1 | Plus |
| 2R | 25286936 | 2R | 7713477..7713602 | 532..658 | 390 | 89 | Plus |
| 2R | 25286936 | 2R | 7711205..7711335 | 490..621 | 190 | 78 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:35:45 has no hits.
UFO11308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:01 Download gff for
UFO11308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1946-RA | 1..829 | 9..842 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:36 Download gff for
UFO11308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1946-RA | 51..889 | 1..842 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:56 Download gff for
UFO11308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1946-RA | 51..889 | 1..842 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:56 Download gff for
UFO11308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7716279..7716415 | 704..842 | 95 | | Plus |
| 2R | 7714973..7715111 | 1..137 | 97 | -> | Plus |
| 2R | 7715532..7715629 | 138..235 | 100 | -> | Plus |
| 2R | 7715701..7715823 | 236..358 | 100 | -> | Plus |
| 2R | 7715879..7716220 | 359..703 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:36 Download gff for
UFO11308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3603206..3603328 | 236..358 | 100 | -> | Plus |
| arm_2R | 3602478..3602616 | 1..137 | 97 | -> | Plus |
| arm_2R | 3603037..3603134 | 138..235 | 100 | -> | Plus |
| arm_2R | 3603384..3603725 | 359..703 | 98 | -> | Plus |
| arm_2R | 3603784..3603920 | 704..842 | 95 | | Plus |
