UFO11309.5prime Sequence
1136 bp (930 high quality bases) assembled on 2012-04-23
> UFO11309.5prime
CAGTCGACATGGTAGAGGGCATGATAAAAAAGCTAACTGCTATTTTATTT
GGGCTTGTATTGGCTGTGTTATTTCGAGTAATTATACCCTTTACTCTGCG
ACTTAAAAGCGCTGAAATAACCATTAATGTGCTTAACTGTTTTAATTTTC
TAACAAGTACCGTTTCCATTACCATTTGCCTGAATTTGGTCAGCCTATAC
TTAGCCAATTTGCGTGATGATTGGCTTGTTCTCGGGCTTATACCGCTGCA
GATACTCGTCCTTCATTGGACTTACTTCACAATTTCAAAACAACTAGAAG
CCATGAACAGGAGCTATAGTACATTCATGGATAGCTTAAACCTTAAATGG
CTGGCATACTCCAATTTTAACGAGACAGATTGGCCTTCGATTGAAAATGC
GGTTTTATGCTGTGGACTGGAGGGTCCCCGTTCTTATATGGATTATCTAC
AAGGGGTTCCAACCCACTGCTACCATCCCGACCTTATCACCCAAGGTTGC
AGTGACTTTGTTAAAAACATTTTTATGCCGATACAACATATAAGTCATTT
GCAGCTCAGATTGGCTATTTTTGTGGAACTGGTAATTTTACTTATTCTTG
CTGCAACGCTTTTGAAGAAATGTATTTCTTTGATCGGCGAAAGGAAACAT
AAAAGAGTTATTACACACGGGCTTGCGGTACTAATAGATTTAGTTAAAAA
CACATTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCTGGGTCATGACTAGTGCTTGGAATTCTCACCAATAAAAAACGCC
CGGCGGCACCGAGCGTCCTGAACAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCACAAGAGTCAAGCGGAGCTCGATATTCAATTACGCCCCC
GGCCCGGCACTCATCGCAGTACTTGTTGTAATTCATTAAGCATTCCTGCC
GAAATGGGAGCCATCACAACGGCATGGTATGATACCTGAATTCGCCAGCG
CATCAGCACTCTGGTCGCCTTGGCGTATAAATATATTGCCTATGGGTGAA
ACCGGGGCGAAAAGTTGCTCTATTGGCCACTTTTAT
UFO11309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31600-RA | 929 | CG31600-RA | 57..757 | 9..709 | 3505 | 100 | Plus |
| CG31600-RB | 914 | CG31600-RB | 57..742 | 9..709 | 3270 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21914441..21914749 | 709..401 | 1545 | 100 | Minus |
| 2L | 23513712 | 2L | 21915016..21915199 | 236..53 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 21914800..21914967 | 403..236 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 21915258..21915302 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:49 has no hits.
UFO11309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:01 Download gff for
UFO11309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31600-RA | 51..766 | 1..721 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:38 Download gff for
UFO11309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31600-RA | 51..766 | 1..721 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:57 Download gff for
UFO11309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31600-RA | 51..766 | 1..721 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:57 Download gff for
UFO11309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21914432..21914748 | 402..721 | 98 | <- | Minus |
| 2L | 21914802..21914966 | 237..401 | 100 | <- | Minus |
| 2L | 21915016..21915198 | 54..236 | 100 | <- | Minus |
| 2L | 21915258..21915308 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:38 Download gff for
UFO11309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21914432..21914748 | 402..721 | 98 | <- | Minus |
| arm_2L | 21914802..21914966 | 237..401 | 100 | <- | Minus |
| arm_2L | 21915016..21915198 | 54..236 | 100 | <- | Minus |
| arm_2L | 21915258..21915308 | 1..53 | 92 | | Minus |
