UFO11312.5prime Sequence
1125 bp (1021 high quality bases) assembled on 2012-04-23
> UFO11312.5prime
CAGTCGACATGACTAAGACAACGATGCATTGGCTGGCTCACTTCCAGATC
ATCTTGCTATGCATTTGGTTGATGTGCCCCCCCAGTTCGCAGGCCATAAA
ATGCGACACTTGTGGCAAGGAGTGTGCCAGCGCATGTGGCACAAAGCACT
TTCGCACATGCTGCTTTAACTACCTTCGCAAGCGATCCGACCCCGATGCA
CTGCGTCAGAGCTCGAACAGGAGGCTCATCGACTTCATACTGCTGCAGGG
GCGTGCCCTCTTCACCCAGGAGTTGCGAGAAAGGCGCCACAATGGCACAT
TGATGGACCTCGGCCTGAACACCTACTACCCCGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACG
TTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAA
CATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAAC
ACGCCACATCTTGCGAATTATATGTGTAGAAACTGCCGGGAAATCGTCGT
GGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGAAAACGG
TGTACAGGGTGAACACTATCCCATATCACAGCTCACCGTCTTTCATTGCA
TACGAAATTCGATGACATCATCAGCGGGCAGATGGTGAATAAGCCGATAA
ACCTTGTGCTTATTTTCCTACGTCTTTAAAAGCGTAAATTCAGCTTGACG
TCTTGTTATAGTATACATTTGAGCA
UFO11312.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trissin-RB | 551 | CG14871-RB | 61..384 | 9..332 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15484897..15485075 | 332..154 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 15485129..15485222 | 154..61 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 15485284..15485336 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:25 has no hits.
UFO11312.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:27:57 Download gff for
UFO11312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14871-RB | 51..388 | 1..337 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:25 Download gff for
UFO11312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trissin-RB | 51..388 | 1..337 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:48 Download gff for
UFO11312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trissin-RB | 51..388 | 1..337 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:48 Download gff for
UFO11312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15484897..15485074 | 155..332 | 100 | <- | Minus |
| 3R | 15485129..15485222 | 61..154 | 100 | <- | Minus |
| 3R | 15485285..15485342 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:25 Download gff for
UFO11312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11310619..11310796 | 155..332 | 100 | <- | Minus |
| arm_3R | 11310851..11310944 | 61..154 | 100 | <- | Minus |
| arm_3R | 11311007..11311064 | 1..60 | 93 | | Minus |
