UFO11313.5prime Sequence
550 bp (550 high quality bases) assembled on 2012-04-23
> UFO11313.5prime
CAGTCGACATGGCAGATACCCGTAAAGACGCCGCGCCGCCGAGCTACGAA
GAAGTCATGAACAGTCCCTCGCAGGATTCCCGGCTGATAGTGGGCGTGCA
TCAGGGAGCACCTAGTGCTCCGCCACCAAACATGCACATGCCAACCTACG
GAGCTTTCGAGACGACGCCGGTCAGCGTGGTGATTCAGCCTGCTCCGGTC
GCTATGCCCACCGAGATCATCGTGATTGGAGGATGCCCTGCATGTCGGAT
TGGATACCTGGAGGACACCTTCTCCGCCTGCGGACTGTGCTGCGCAATCT
TCTTCTTCCCGCTGGGAATTCTCTGTTGCTTGGCCATGCGTGAGAAGCGC
TGTTCCAACTGCGGAACGGTTTTCGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
UFO11313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12012-RC | 1185 | CG12012-RC | 125..490 | 9..374 | 1830 | 100 | Plus |
| CG12012-RA | 880 | CG12012-RA | 125..490 | 9..374 | 1830 | 100 | Plus |
| CG12012-RB | 931 | CG12012-RB | 242..541 | 75..374 | 1500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3376998..3377297 | 75..374 | 1500 | 100 | Plus |
| 3L | 28110227 | 3L | 3376881..3376947 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:36:01 has no hits.
UFO11313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:04 Download gff for
UFO11313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12012-RA | 116..490 | 1..374 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:45 Download gff for
UFO11313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12012-RA | 116..490 | 1..374 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:02 Download gff for
UFO11313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12012-RA | 116..490 | 1..374 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:02 Download gff for
UFO11313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3376872..3376947 | 1..75 | 94 | -> | Plus |
| 3L | 3376999..3377297 | 76..374 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:45 Download gff for
UFO11313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3376872..3376947 | 1..75 | 94 | -> | Plus |
| arm_3L | 3376999..3377297 | 76..374 | 100 | == | Plus |
