UFO11315.5prime Sequence
1121 bp (962 high quality bases) assembled on 2012-04-23
> UFO11315.5prime
CAGTCGACATGGCAGAGACACCAGAATCCCAGGCAGCGCTGAGCACTTCC
TCCTCCACACCTGCAGATAAGGATGGTTCCAAAATTTGTATCCTTCTGAA
CGCCACTGGCAATGTGCCCATCATCAAAAAGCGAACCTGGACCGTAGATC
CCAACAAGACAGTCGGCTGGATACAGACGTTCATCCACAAGTTTCTGAAA
CTCGATGCCAGCGAGCAAATTTTCCTGTACGTTAATCAGACATTTGCACC
TGCCCCGGATCAGATAATCAAGAACTTGTACGAGTGCCATGGAACCAATG
GGAAACTGGTGCTCTACTACTGCAAGAATCAGGCGTGGGGCGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAACTCACCCAGGGATTGGCTGAA
ACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTC
ACCGTAACACGTCACCATCTTTGCGAATATATGTGTAGAACTGCCGGAAA
TTCTTCCGTGGGTATTCACTCCAGAGCGATGAAAATGTTTCAGTTTGGCT
CATGGGAAAACGGGTGTACCAGGGTGAACACTTATCCTATATCACCAGCT
CACGCCTTTCATTGCCATACAATTCCGGATGACATCATCAGGGGGCAAAA
TGTTAATAAAGGCCGGTATACTTGGGCTATTTTTCTTTACGGCTTTTAAA
GGCCCGCATATATCTGCCTGA
UFO11315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg12-RB | 469 | CG10861-RB | 50..382 | 9..341 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12137159..12137295 | 85..221 | 685 | 100 | Plus |
| 3L | 28110227 | 3L | 12137353..12137472 | 222..341 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 12137016..12137091 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:36:05 has no hits.
UFO11315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:05 Download gff for
UFO11315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg12-RB | 243..578 | 9..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:47 Download gff for
UFO11315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg12-RB | 50..385 | 9..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:03 Download gff for
UFO11315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg12-RB | 50..385 | 9..345 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:03 Download gff for
UFO11315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12137159..12137295 | 85..221 | 100 | -> | Plus |
| 3L | 12137353..12137472 | 222..341 | 100 | == | Plus |
| 3L | 12137016..12137091 | 9..84 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:47 Download gff for
UFO11315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12130259..12130395 | 85..221 | 100 | -> | Plus |
| arm_3L | 12130453..12130572 | 222..341 | 100 | == | Plus |
| arm_3L | 12130116..12130191 | 9..84 | 100 | -> | Plus |
