UFO11320.5prime Sequence
1127 bp (987 high quality bases) assembled on 2012-04-23
> UFO11320.5prime
CAGTCGACATGGATAAACATAAACCTACGTTGCTGCCGTATATTATGGAC
ATGCTAAGTCGCGAGACGCAAATGTGCTCTTCTGTGGACGACGTGGTTAA
ACACATCAAGGACGTTATGCTCGAGGAGCACGTCAGAGCCTTCGGGAGCC
TCAAGCGTGCGGTGGAGTTTGCCCTGGAGTTGGGCGTCAACATGGGCATC
CTCTCGATGACCAAGACGGTCCGCATGCCCATCAGGTACCGCAGAAGTAA
ATCCAAGACTAAGGTGCCTGTCAGGAACAGGATCCCTCTCCGCTTGGGAC
GCCAGCTGACCAAGCAGCGGATGGCGACGACCACGGCAACCAAGTTGGCG
GCCAAGAAGCGGTCAGGCGGACGCCTAAAAAAGCCCAAGAAGACTCCTGG
GGCAGCGCCAAAGAAGCAAAACGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
ATTAAACCCTTTTAGGAAATAGGCCAGGGTTTTCACGTACACGCCACATC
TTGCGAATATATTGTGTAGAAACTGCCCGGAAATCGTCGTGTATTCACTC
CAGAGCGATGAAAACGGTTCAATTGCTCATGAAACGGGTGTACAGGTGAA
ACTATCCAATATCACAGCTTCACGTCTTCATGCCATACGAACTCCGGATG
AATCATCAGCGCAGATGTTAATAAGGG
UFO11320.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17261-RB | 869 | CG17261-RB | 390..803 | 9..422 | 2070 | 100 | Plus |
| CG17261-RA | 598 | CG17261-RA | 119..532 | 9..422 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3043181..3043527 | 76..422 | 1735 | 100 | Plus |
| 2L | 23513712 | 2L | 3043037..3043104 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:36:18 has no hits.
UFO11320.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:07 Download gff for
UFO11320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17261-RA | 119..532 | 9..422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:52 Download gff for
UFO11320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17261-RA | 119..532 | 9..422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:09 Download gff for
UFO11320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17261-RA | 119..532 | 9..422 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:09 Download gff for
UFO11320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3043181..3043527 | 76..422 | 100 | == | Plus |
| 2L | 3043037..3043103 | 9..75 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:52 Download gff for
UFO11320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3043037..3043103 | 9..75 | 100 | -> | Plus |
| arm_2L | 3043181..3043527 | 76..422 | 100 | == | Plus |
