UFO11324.5prime Sequence
1134 bp (1012 high quality bases) assembled on 2012-04-23
> UFO11324.5prime
CAGTCGACATGTTAAAGATAAATCCGCGAATGCTGATGCAACAGTGCCTG
CGCCACGCCCACAGCCAGGTGCGCGTCCGCTTCGCCCCAAGTCCCACGGG
TTACCTGCATTTGGGCGGTCTGCGCACAGCCCTGTACAATTTCCTGTACG
CCAGGCATTTGGGCGGAAAATTCCTGTTGCGGATCGAGGACACGGATCAA
ACTCGACTAGTGCCCGGTGCCAGTGAACGACTGGTGGAGGATCTGCTCTG
GGCAGGCATAGAAATTGACGAGGGACCCGGTTTTGGCGGTCAACTGGGAC
CCTATGTGCAGAGTCAGCGAACGGAAATTTACAGCAAAGCCATTGAAGAA
CTGCTCCATAATGGCACCGCGTACAGATGCTTTTGCACCGAACGCCGTCT
GGATTTGTTGCGTAAGGAGGCGCTGAGAACCCGGCAAGTTCCACGCTATG
ATAACAAGTGCCGACATCTAACGACTTCGGAAGTGGATTCCCTACTGGCC
AAGGGTACACCCTACTGCATACGATTCAAGCTGACGGATCACGAGGAGCC
ACTGGATGATCTCATCTACGGCAAGGTGCATCACAATGTCAGCGACAACG
AAGGCGATCCAGTGGTCATGAAGAGCGATCAATTTCCCACCTATCACTTT
GCCAACGTGGTGGACGACCATTTGATGGGCATCACCCACGTCCTGAGGGG
CGTGGAGTGGCAGATATCCACCACCAAGCATTTGCTGCTCTACAAAGCTT
TTGGCTGGCAGCCCCCTAAATTTGGTCACCTGCCGCTTTTGGTGAATGCA
GATGGCACCAAGCTAAGCAAACGTCAAGGAGACATTGGCATTCAGCACTT
TCGGGAACGCGGCTACTTTCCGCAGGCTTTAGTGAACTATGTGGTTTCTG
CAGGCGGAGATTCGAGCATCGTACCAATGCCAAGCAGCAGCTGCTCAGCA
TGCAGCGCTCCATGAGCAGTTTCACATAGAGCGCGTCACTCCCATCCGGA
GTCGCTTATCCGACTGCTCGATGATTCTTAAATCGCCTGAGATTGGGCAC
CGTTTGTTCTGGCAATGAAAGTTCGTTACGAAATTGTTCAATGATGGCAC
AGCTGGTAGAGCTATTTCGCAACTCCACTTAAAT
UFO11324.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4573-RA | 1700 | CG4573-RA | 67..1169 | 9..1107 | 5055 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16416315..16416728 | 745..332 | 2070 | 100 | Minus |
| 3L | 28110227 | 3L | 16416786..16417111 | 334..9 | 1630 | 100 | Minus |
| 3L | 28110227 | 3L | 16415993..16416248 | 998..746 | 1130 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:57 has no hits.
UFO11324.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:03 Download gff for
UFO11324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4573-RA | 48..1077 | 1..1025 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:43 Download gff for
UFO11324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4573-RA | 60..1089 | 1..1025 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:00 Download gff for
UFO11324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4573-RA | 60..1089 | 1..1025 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:00 Download gff for
UFO11324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16415963..16416248 | 746..1025 | 97 | <- | Minus |
| 3L | 16416315..16416725 | 335..745 | 100 | <- | Minus |
| 3L | 16416786..16417118 | 1..334 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:43 Download gff for
UFO11324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16409063..16409348 | 746..1025 | 97 | <- | Minus |
| arm_3L | 16409415..16409825 | 335..745 | 100 | <- | Minus |
| arm_3L | 16409886..16410218 | 1..334 | 98 | | Minus |
