UFO11325.5prime Sequence
1092 bp (1009 high quality bases) assembled on 2012-04-23
> UFO11325.5prime
CAGTCGACATGCATAGTGCACATATATTATTTTTCGTACTCGGGCTCACA
TTCGTTGGCATTTGGGTTCAAGCCGAGGTCCAAAAACCCATCACGGAACA
ATGCCTGATCTGTATGTGTGAGGCTTTGAGTGGCTGCAACGCGACGGCTG
TGTGCGTGAATGGGGCATGTGGCATTTTCAGGATCACTTGGGATCAGTGG
GTGGACTCAGGCAGATTGACCATACCTGGCGACTCGCCATTGACGGATAG
TTCTTTTACCAACTGCGCCAATGATCCGTATTGTGCGGCCGATACTTTGC
AGAGTTATATGGTGAAGTACGGACAGGATTGCAACGATGATCAGAAGGAG
GACTGTTACGATTATGGTGCCATTCACTATATGGGTCCCTTCAACTGCAA
GGCGGATATGCCCTACACCTACGAGAGCATTTTCAAACGATGTTTGAGGA
ACGCGATGCGGAATGACAAGCGTCAGAATTCCAGCGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCA
ACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAA
ACATATTCTCATAAACCCTTTAGGGAATAGCCAGGTTTCACGTACACGCA
CATCTTGCGATAATGTGTAGAACTGCGAAATCGTCTAATTCACTCCGAGC
GATGAAACGTTCAGATGCCATGGAACGGGTTACAGGTGAACC
UFO11325.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6429-RA | 672 | CG6429-RA | 62..538 | 9..485 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16873076..16873319 | 9..252 | 1220 | 100 | Plus |
| 2R | 25286936 | 2R | 16873389..16873621 | 253..485 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:36:38 has no hits.
UFO11325.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:10 Download gff for
UFO11325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6429-RA | 49..541 | 1..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:01 Download gff for
UFO11325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6429-RA | 51..543 | 1..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:16 Download gff for
UFO11325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6429-RA | 51..543 | 1..491 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:16 Download gff for
UFO11325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16873389..16873621 | 253..485 | 100 | == | Plus |
| 2R | 16873065..16873319 | 1..252 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:01 Download gff for
UFO11325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12760894..12761126 | 253..485 | 100 | == | Plus |
| arm_2R | 12760570..12760824 | 1..252 | 98 | -> | Plus |
