UFO11328.5prime Sequence
1109 bp (965 high quality bases) assembled on 2012-04-23
> UFO11328.5prime
CAGTCGACATGAAGGTCTTTGTCGTTCTCGCCGTAATCCTGGCCGTGTCC
AGTGCCGCCCCGCAGTTTAATAATGGCAATGCTAACGCAAATGCCAACGC
AAATGCTGAGAGTGAGGGCGGTGGAAGACCAGGATTCAGCGGACCTGGTT
TCCAGAAGGAAGGCGGATTCGGAGGAGGATTCGGGGAACGAGGCCCTGGA
TTCGGAGGACAGGGTGGATTCGGAGGGCCAGGACAAGGTGGATTCGGAGG
ACCAGGTGGCTTTGAAGGACAAGGTGGATTCGGCGGACAGGGTGGATTCG
GAGGACAGGGTGGATTCGGAGGACAGGGTGGATTCGGAGGACCAGGAGGA
TTCGGAGGACCAGGAGGACCAGGAGGATTCGGTGGTAACTCCGAAGCTAA
CGCCAATGCCAATGCTGTCGCCAACTCTGACGGAGGATTTGGCGGTGGTA
ATGCCAATGCAAACGCCAATGCCAATGCCAACACCCGAGGTGGCAGTGCT
AATGCTAACGCCAATGCCGTCGCCAACGCATTCCGCAAAGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTTAGGCATTCTGCCGACATGGAGGCCATCACAA
ACGGCATGATGAACCTGAATCCGCCAGCGCATCAGCACCTTGTCGCCTTG
CGTATAATATTTGCCCATGGTGAAACGGGGGCGAAAAGTTGTCCATATTT
GCCACGTTTAATCAAACCTGTGAACTCACCCAGGGATTGCTGAACGAAAA
CTATTCCTCAATAACCTTTAGGAATAGCAGGTTTTCACCGTACAGCCACA
TCTGCGATTATTGGTGTGAACTGCGAATTCGTCTGTATTCATTCGAGCCA
TGAACGGTC
UFO11328.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7299-RC | 983 | CG7299-RC | 37..568 | 8..539 | 2660 | 100 | Plus |
| CG7299-RA | 643 | CG7299-RA | 37..568 | 8..539 | 2660 | 100 | Plus |
| CG7299-RC | 983 | CG7299-RC | 265..389 | 173..306 | 220 | 79.1 | Plus |
| CG7299-RA | 643 | CG7299-RA | 265..389 | 173..306 | 220 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10683842..10684373 | 539..8 | 2660 | 100 | Minus |
| 2L | 23513712 | 2L | 10684021..10684115 | 324..230 | 310 | 88.4 | Minus |
| 2L | 23513712 | 2L | 10684057..10684151 | 360..266 | 310 | 88.4 | Minus |
| 2L | 23513712 | 2L | 10684021..10684096 | 306..231 | 215 | 85.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:36:47 has no hits.
UFO11328.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:11 Download gff for
UFO11328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-RA | 27..571 | 1..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:06 Download gff for
UFO11328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-RA | 29..573 | 1..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:19 Download gff for
UFO11328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-RA | 29..573 | 1..545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:19 Download gff for
UFO11328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10683842..10684381 | 1..539 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:06 Download gff for
UFO11328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10683842..10684381 | 1..539 | 99 | | Minus |
