UFO11330.5prime Sequence
1138 bp (1028 high quality bases) assembled on 2012-04-23
> UFO11330.5prime
CAGTCGACATGGAGTTTCCGCCTTGTCCTCCCTCGCTGAAGTCCATCCAA
CACTTTCTGAAGCTGGCCCAGGAACATGATACCCGGGATGTGGTCATCGC
CTACTGGGCGAGACTCTATGCTCTCCAGGTGGGCCTCAAAGCCTCCACCC
AAACGGGTGAAGAAACCAAACTGCTGCTGGGCATCATGGACTGGCTGGAG
CAGATGAAGAAACAGTATGCTGAGAACGAGGCCATCACCAACGAGGTGGC
TGCCCAGGCACACATCGAGAACTACGCCTTGAAACTATTCCTGTACGCCG
ACAAACAGGATCGCGAGGAGAACTTCGGAAAAAACGTCGTTAAGGCCTTC
TACTCCAGTGGTGTGCTCTACGACATTCTCCAGACCTTCGGTGAACTGAG
CGAAGAGGCGCTGCACAACAGGAAGTACGCCAAGTGGAAGGCCGCCTACA
TCCACAATTGCCTGAAGAACGGTGAGACACCGATTCCCGGCCCCTTGCCA
GACGACGACGATGAGGCGGAGCTCGAGGGGGAGAATGCCAACGCCTCGGC
AGACACATCGCCGGAGGACGCCGCGGGAGCAGCTGCTCCAGCGCCCTACC
AGCCGGAGCCTGACTCACAGCCACCAGCTCCATCATCACCGACAACTTCC
GGAGTGGTCCCTCCCACCGCCGAGGAGGTGCTGAACAACCCGAACAAATT
GCCCAGTCCACCGGTGGACGAGGAGAAGCCGGGCGGCTTTGTGCCCTACG
TGCCCACAGCTCAGCCTAATCCGGCCACGGCGGCCACCATTTACCAGCCC
ATTGTGCCCGTGGCCGGGGTGCAAATCACTCCCGACCAAATGATTACCGC
CCAGAAGTATTGCAAGTACGCCGGCAGTGCCCTCAACTACGACGACGTCA
AGACAGCCATCGAGAACCTGCAGAGGCCCTGAGCTGCTGAGCACGGGTCG
AGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGTAGTGTCATAT
CATATCATAATCATAATCATATCACACTAGGCTAGGAGAATCTGTCATGA
CTATGCTGATCCTCACATAAAAACGCCGCCGCACGGAAGGTCTGAACAAA
TCCGAATGGATTCTGAAGTCATACTGAATTCTATCACA
UFO11330.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7967-RA | 1257 | CG7967-RA | 102..1045 | 9..949 | 4645 | 99.7 | Plus |
| CG7970-RC | 1270 | CG7970-RC | 1..50 | 58..9 | 250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1651650..1652264 | 944..332 | 2975 | 99.7 | Minus |
| 3L | 28110227 | 3L | 1652332..1652483 | 331..180 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 1652690..1652799 | 118..9 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 1652566..1652628 | 181..119 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:36:51 has no hits.
UFO11330.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:12 Download gff for
UFO11330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7967-RA | 113..1070 | 1..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:08 Download gff for
UFO11330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7967-RA | 95..1052 | 1..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:20 Download gff for
UFO11330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7967-RA | 95..1052 | 1..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:20 Download gff for
UFO11330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1651641..1652264 | 332..952 | 99 | <- | Minus |
| 3L | 1652332..1652482 | 181..331 | 100 | <- | Minus |
| 3L | 1652567..1652628 | 119..180 | 100 | <- | Minus |
| 3L | 1652690..1652803 | 1..118 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:08 Download gff for
UFO11330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1651641..1652264 | 332..952 | 99 | <- | Minus |
| arm_3L | 1652332..1652482 | 181..331 | 100 | <- | Minus |
| arm_3L | 1652567..1652628 | 119..180 | 100 | <- | Minus |
| arm_3L | 1652690..1652803 | 1..118 | 96 | | Minus |
