UFO11331.5prime Sequence
1125 bp (987 high quality bases) assembled on 2012-04-23
> UFO11331.5prime
CAGTCGACATGGGAGCATCGACAGTTAAGCCCTTTTCTGAAGCGGAATGC
AAGGCTATCAAGAAGTTCACGAAGAGTTACAAGAAGCATCATGCCGACCT
AGACGAAGACGAGGTAAAAAGGTCAGCAGAAAATGCCTGGGGAAAGCTTT
TGCCCCATCAAAAGAAGTATTTTGAGGTGAGACCTAAAGAAACCCCCGTA
AAAAGAATGTTGCCGGCCGCCAGGAAAAAACCTAAGAACCAGAAGAAGAA
AGCAGTCCCCAAATGGCGTTATCGTTCGAGGAAAAGACCCATGGCCAAGC
CCACGCCAAATCCCAATAATCCTGCAATGAGCACCGCGTTCATTGGATTT
TTGCGCGAGTACCAAAGGAGGAACACCATCGTAGACGTAAAGAAAAGGCT
GCAAAGAGCAGCCAAGATGTGGTCAAAACTATCTAAAGCTCAGAAAAACA
AATTTCGCACGGCGGGAGGGAGGGAGAGCTTTCTCAAGAATGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCATTTT
TGGCCACGTTTAATCAGAACTGGGTGAAACTCACCCAGGGATTGGCTGAG
ACGAAAACATATTCTCAATAACCCTTTAGGGCAATAAGCCAGGTTTTCAC
GTAACACGCCACATCTTTGCGAATTATATGGTGTAGAACCTGCCGGAATT
GGTCTTGCATTCACTCCGGAGCGATGAAACGTTCAGTTTGCTCATGGAAC
GGGTGTACAGGGTGAAACCTTATTC
UFO11331.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42355-RD | 670 | CG42355-RD | 107..594 | 4..491 | 2425 | 99.8 | Plus |
| CG42355-RC | 742 | CG42355-RC | 179..666 | 4..491 | 2425 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2037528..2037818 | 465..175 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 2037872..2038046 | 178..4 | 860 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:36:55 has no hits.
UFO11331.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:13 Download gff for
UFO11331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42355-RB | 136..628 | 1..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:10 Download gff for
UFO11331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42355-RC | 177..669 | 1..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:22 Download gff for
UFO11331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42355-RC | 177..669 | 1..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:22 Download gff for
UFO11331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2037874..2038048 | 1..176 | 98 | | Minus |
| 3L | 2037447..2037473 | 465..491 | 100 | <- | Minus |
| 3L | 2037529..2037816 | 177..464 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:10 Download gff for
UFO11331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2037447..2037473 | 465..491 | 100 | <- | Minus |
| arm_3L | 2037529..2037816 | 177..464 | 100 | <- | Minus |
| arm_3L | 2037874..2038048 | 1..176 | 98 | | Minus |
