UFO11332.5prime Sequence
1147 bp (1039 high quality bases) assembled on 2012-04-23
> UFO11332.5prime
CAGTCGACATGCCCTTAACCACCAATACAGTGGACAAAAAAAATGAACAC
GAAAAACCATTTGGCTTAGAAATACCCAAACCAGAGCTATTTATATATCA
GCACCCCGCAGCCGATGAGTCCTTTCTTAAAGAACAACCTACCAAGGTCG
AAGATGTGATCGAGTACCTGGATGTGCTTGAAAACGCCAACAAGACCGAT
TCGTCAAAAAAAAGACAAAAATCTACGATTACCATGGATGACATAAAATG
TATTGTGACACGGCGAAGTGCTGTAAGCACGACAACATTTCGTCGAGGCA
AAGCAAAAAGAGCCTTAATTAACACGAATCAATTCACGTTTATGCGTCAG
ATTGATTCGGAACCCGATGATCGTGTTTTGGCCAGAGAACAGCGTGAAGA
TGTGGCCGAAACATTTCGTCGGATGGGAAATTACGAGTATCGTAAACTAA
ACTTCAGTTTAGCCAAAGACTACTATTCAAAGGGTATACAATACATAAAA
GACTCGCCTGTCCTATACGTAAATCGAGCCCTTTGCTTTATCAAGTTACG
CGAATTTAAGCTAGGTATCATAGATTGTGATTATGTGTTGGCCAAAATTG
ACGAACATTATCTGCGTGCTTGGCTTTATAGGGCAGCTGCCTATAAGCGT
CTGAATGATGAGCCAAACTTTGAATATAGTGTTGATCGCGCCAGACGATT
TAACAGATCGGATGCTGACTTTATAGATGAATTCCTGGACAAAATGAGAT
CGCTTCTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACAATAAAAACGCCCGG
CGGCAACCGAGCGTTCTGACAAATCCAGATGGAGTTCTGAGTCATTACTG
GATCTATCAACAGGAGTCCAGCGAGCTCGATATCAAATACGCCCGCCCTG
CCACTCATCGCAGTACTGTTGTATCATAGCATTCTGCGACATGGAGCAAT
CCAACCGCATGATGACTGATCGCAGGCGGCATCAGGCACTTGTCGCTGGC
TTATATATTTGCAATGTGAACGGGCAAGAGCTGTTCTAATTTGCCCA
UFO11332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34274-RA | 839 | CG34274-RA | 42..791 | 9..758 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15732036..15732382 | 200..546 | 1735 | 100 | Plus |
| 3R | 32079331 | 3R | 15732433..15732646 | 545..758 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 15731787..15731977 | 9..199 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:36:58 has no hits.
UFO11332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:13 Download gff for
UFO11332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34274-RA | 36..794 | 1..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:12 Download gff for
UFO11332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34274-RA | 36..794 | 1..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:23 Download gff for
UFO11332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34274-RA | 36..794 | 1..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:23 Download gff for
UFO11332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15731781..15731977 | 1..199 | 97 | -> | Plus |
| 3R | 15732036..15732380 | 200..544 | 100 | -> | Plus |
| 3R | 15732433..15732649 | 545..762 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:12 Download gff for
UFO11332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11557503..11557699 | 1..199 | 97 | -> | Plus |
| arm_3R | 11557758..11558102 | 200..544 | 100 | -> | Plus |
| arm_3R | 11558155..11558371 | 545..762 | 99 | == | Plus |
