UFO11335.5prime Sequence
1178 bp (1050 high quality bases) assembled on 2012-04-23
> UFO11335.5prime
CAGTCGACATGTCAGATTCGACTATTTTCCGTTTTTCAGCGGACAGCAAC
GTATCCAGTTCGAGCTCCAATTCCAGTGTATCCGACTCTTCTGTGGACTC
CCATTCATCCATAGAATCCAATTCGGGACACAATACATCCGTGGAATCTC
AGTCATCCGCGGAATCTGATTCATCCGCTGATTCCCATTCGTCCTTGGAA
CGCCCATCCCCAGTGGAGCGTGATTTATCTGTGGAATCAGACTCATCTTC
AGCCACCAATACCAGCGAATCTTCAGTCGGAGAAGCTTCAAACCAACTGC
AGTCACCGCAAAGCAATAACCCCTTAAATATGGCTAACTTGTCTGTCTCG
ACTGAAGATGCTCATTCGCAGATCAGATCACTTACCCAGGATGTGATCCA
GATGGAAGCAGAGTTGGATCGCATGAATCGCTACTGCGAGGAAGTTGTGG
CACAGATTGACACCTTCGCCACGAGAACCTCAACGCCAACAACTCGTAGA
ATTCGCCGCAGAACGAGTCCAGTAGAAGTGATAGATCTGTCCCATTTGGA
CCGTGCACCACCTGTTCGATCCGCTCGGAATCGTGATCCCGATGCTTTCA
TCGATCTATGCACCCCCGAAGGCCCAAGAAGTCGCACAGTGAATCTTCAC
TCCAACGACTCCCTCACCATTCTGCCACGTCGGTCAGCCGAAAATGACCC
GGTAGTGGATCTCGACGTTGCGTCGCCACCAAAACGCGTTAATCGCGACA
TTGATGAGTCCCAAAAAGAGGAGTTATACAAGTGCCCCATCTGCATGGAC
AGTGTATCGAAGCGCGAGCCAGTGTCAACCAAATGTGGACACGTCTTCTG
CCGCGAATGCATCGAAACAGCCATCAGAGCTACGCACAAGTGCCCAATAT
GCAACAAGAAGCTGACCGCACGTCAATTTTTCGCATTTACTTGGCAAGCT
TTCTAGACATTCGTTTGCGCGGCGGGCCCAGGTAAGTGTCATATCATATC
ATAATCATATCATAATCACACTAGCCTAGAGAATCTGTCATGACTAGTGC
TTGTATTCCTCACAATAAAAACGCCCGGGCGCCAACGGACCGTCTGACAA
TCCGAATGGGAGTTCTGGAGTCATACTGATCATCAACAGGAGTCTAAGCC
GGCTCGATATCCATATTATGCCCCCGCC
UFO11335.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgrn-RB | 1611 | CG10981-RB | 335..1270 | 9..943 | 4655 | 99.9 | Plus |
| dgrn-RA | 1632 | CG10981-RA | 383..1291 | 36..943 | 4520 | 99.9 | Plus |
| dgrn-RD | 1635 | CG10981-RD | 386..1294 | 36..943 | 4520 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5825805..5826235 | 514..943 | 2105 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5825057..5825444 | 36..423 | 1940 | 100 | Plus |
| 3R | 32079331 | 3R | 5825499..5825588 | 424..513 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:36:27 has no hits.
UFO11335.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:08 Download gff for
UFO11335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10981-RB | 337..1289 | 1..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:57 Download gff for
UFO11335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RB | 337..1289 | 1..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:12 Download gff for
UFO11335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RB | 327..1279 | 1..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:12 Download gff for
UFO11335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5825057..5825444 | 36..423 | 100 | -> | Plus |
| 3R | 5825499..5825588 | 424..513 | 100 | -> | Plus |
| 3R | 5825805..5826244 | 514..954 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:57 Download gff for
UFO11335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1651221..1651310 | 424..513 | 100 | -> | Plus |
| arm_3R | 1650779..1651166 | 36..423 | 100 | -> | Plus |
| arm_3R | 1651527..1651966 | 514..954 | 98 | | Plus |
