Clone UFO11336 Report

Search the DGRC for UFO11336

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:113
Well:36
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG11294-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11336.5prime Sequence

1129 bp (1010 high quality bases) assembled on 2012-04-23

> UFO11336.5prime
CAGTCGACATGGCAGGTCCTTTTATATCACCGCTGCCCGGCGATCTGCTC
ACGGAGTATATGTTTGGCCGTAGGCGACAGCGCCGGAACCGGACGACCTT
CACGCCACAGCAGCTGCAGGAGCTGGAGGCACTCTTCCAGAAGACCCACT
ATCCCGACGTCTTCCTGCGCGAGGAGGTGGCCCTGAGGATCAGCCTCAGC
GAGGCACGCGTCCAGGTGTGGTTCCAGAATCGCCGGGCCAAGTGGCGCAA
GCAGGCACGACTGCAGCTCCTCCAGGACGCCTGGCGGATGCGCTGCCTCA
GCCTGGGCACGCCCCCCGTCATGGGCGGTGGAGCGGTGCAGGGCGGATCC
GGCAACGGAGCTACGGCTCGACCGCCCAGCCAGACGCCGGAGAACCTCTC
TTCCGCGAGCAAGGATTCGGAACTGGCGGAGGTGGGCAATGGACCCAATT
CGGGGAGCTTCACCATGATGCACCCGGCATTCCAGCAGCAGCATCAGCAA
CAACAGCACCAGGGACACCAGCAGGCCACGGATCAGGATAAGCTATCGAA
GACCTATACAGAACTAAAGCTCTATAAGGCGCCGTCGCACGGCATGGAAC
TGGGCGGAATGGCCGCCCTATCCGGACACTCCGACGAGGGTTCCGATGGA
TCCGATTCCGAGGAGATTGATCTCACCTCCGGCGCCTGTATCGATTTCTC
CCAGAGCAGCAAGCTCCAGCAGCAGCAGCAGCAGCACAACAACAGGGAAC
TCACGGGGCGGCGGGATCAGCGGAGGCGAATGGAGGCCTGGCAAGCTTTC
TAGACCATTCGGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACACCTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACAATAAAAACGCCCGGGCGCACCGAGCGTTCTG
ACAATCCAGATGGAGTTCTGAGTCATTACTGATCTATCACAGGAGTCCCA
GCGAGCTCGAATATCAAATTACGCCCCGCCCTGCCACTTCATCGCAGTAC
TTTTGTATTCAATTAGGCAATTCTCTGCGAACTTGAAGCATCACAAACGC
AATGATGAACTGAATCGCCAGGCGGCATC

UFO11336.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11294-RB 1291 CG11294-RB 158..940 9..790 3875 99.7 Plus
CG11294-RA 1068 CG11294-RA 158..940 9..790 3875 99.7 Plus
Rx-RB 3267 CG10052-RB 1969..2139 77..247 290 79.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8692171..8692749 790..213 2830 99.7 Minus
X 23542271 X 8693254..8693463 218..9 1050 100 Minus
2L 23513712 2L 578169..578318 106..255 255 78 Plus
3R 32079331 3R 18237911..18237996 168..253 190 81.4 Plus
Blast to na_te.dros performed 2014-11-28 02:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6836 470..543 172 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6850 483..524 156 85.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6795 470..523 153 75.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2412 483..570 151 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6774 483..523 151 85.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2390 483..524 147 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2381 483..545 145 74.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6875..6952 461..536 142 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6798..6886 456..545 141 63.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3294..3389 483..576 141 64.9 Plus
roo 9092 roo DM_ROO 9092bp 1058..1101 480..523 139 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2417 483..524 138 81 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2604..2688 483..567 137 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6866..6910 480..524 135 77.8 Plus
roo 9092 roo DM_ROO 9092bp 1040..1122 445..523 134 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2386 483..523 133 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2395 483..523 133 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2404 483..523 133 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2428 483..523 133 80.5 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7955..8023 483..548 131 68.1 Plus
TART-C 11124 TART-C TARTC 11124bp 9399..9467 483..548 131 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2454..2528 483..559 128 64.9 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 984..1025 483..523 126 81 Plus
roo 9092 roo DM_ROO 9092bp 1106..1146 483..523 124 78 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6838 470..524 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1508..1598 461..554 121 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1509..1580 443..512 121 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1556..1586 482..512 119 87.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2419 483..523 115 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6824..6885 461..523 114 66.7 Plus
TART-A 13424 TART-A 13424bp 91..159 455..523 111 62.3 Plus
TART-A 13424 TART-A 13424bp 11269..11337 455..523 111 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2372 485..551 110 62.7 Plus

UFO11336.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:09 Download gff for UFO11336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11294-RA 87..874 1..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:59 Download gff for UFO11336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11294-RA 87..874 1..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:13 Download gff for UFO11336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11294-RA 153..940 1..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:13 Download gff for UFO11336.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8692171..8692746 216..790 99 <- Minus
X 8693257..8693468 1..215 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:59 Download gff for UFO11336.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8586204..8586779 216..790 99 <- Minus
arm_X 8587290..8587501 1..215 98   Minus