UFO11336.5prime Sequence
1129 bp (1010 high quality bases) assembled on 2012-04-23
> UFO11336.5prime
CAGTCGACATGGCAGGTCCTTTTATATCACCGCTGCCCGGCGATCTGCTC
ACGGAGTATATGTTTGGCCGTAGGCGACAGCGCCGGAACCGGACGACCTT
CACGCCACAGCAGCTGCAGGAGCTGGAGGCACTCTTCCAGAAGACCCACT
ATCCCGACGTCTTCCTGCGCGAGGAGGTGGCCCTGAGGATCAGCCTCAGC
GAGGCACGCGTCCAGGTGTGGTTCCAGAATCGCCGGGCCAAGTGGCGCAA
GCAGGCACGACTGCAGCTCCTCCAGGACGCCTGGCGGATGCGCTGCCTCA
GCCTGGGCACGCCCCCCGTCATGGGCGGTGGAGCGGTGCAGGGCGGATCC
GGCAACGGAGCTACGGCTCGACCGCCCAGCCAGACGCCGGAGAACCTCTC
TTCCGCGAGCAAGGATTCGGAACTGGCGGAGGTGGGCAATGGACCCAATT
CGGGGAGCTTCACCATGATGCACCCGGCATTCCAGCAGCAGCATCAGCAA
CAACAGCACCAGGGACACCAGCAGGCCACGGATCAGGATAAGCTATCGAA
GACCTATACAGAACTAAAGCTCTATAAGGCGCCGTCGCACGGCATGGAAC
TGGGCGGAATGGCCGCCCTATCCGGACACTCCGACGAGGGTTCCGATGGA
TCCGATTCCGAGGAGATTGATCTCACCTCCGGCGCCTGTATCGATTTCTC
CCAGAGCAGCAAGCTCCAGCAGCAGCAGCAGCAGCACAACAACAGGGAAC
TCACGGGGCGGCGGGATCAGCGGAGGCGAATGGAGGCCTGGCAAGCTTTC
TAGACCATTCGGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACACCTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACAATAAAAACGCCCGGGCGCACCGAGCGTTCTG
ACAATCCAGATGGAGTTCTGAGTCATTACTGATCTATCACAGGAGTCCCA
GCGAGCTCGAATATCAAATTACGCCCCGCCCTGCCACTTCATCGCAGTAC
TTTTGTATTCAATTAGGCAATTCTCTGCGAACTTGAAGCATCACAAACGC
AATGATGAACTGAATCGCCAGGCGGCATC
UFO11336.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11294-RB | 1291 | CG11294-RB | 158..940 | 9..790 | 3875 | 99.7 | Plus |
CG11294-RA | 1068 | CG11294-RA | 158..940 | 9..790 | 3875 | 99.7 | Plus |
Rx-RB | 3267 | CG10052-RB | 1969..2139 | 77..247 | 290 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8692171..8692749 | 790..213 | 2830 | 99.7 | Minus |
X | 23542271 | X | 8693254..8693463 | 218..9 | 1050 | 100 | Minus |
2L | 23513712 | 2L | 578169..578318 | 106..255 | 255 | 78 | Plus |
3R | 32079331 | 3R | 18237911..18237996 | 168..253 | 190 | 81.4 | Plus |
Blast to na_te.dros performed 2014-11-28 02:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6836 | 470..543 | 172 | 70.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6850 | 483..524 | 156 | 85.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6795 | 470..523 | 153 | 75.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2412 | 483..570 | 151 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6774 | 483..523 | 151 | 85.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2390 | 483..524 | 147 | 83.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2381 | 483..545 | 145 | 74.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6875..6952 | 461..536 | 142 | 68.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6886 | 456..545 | 141 | 63.3 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3294..3389 | 483..576 | 141 | 64.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1058..1101 | 480..523 | 139 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2417 | 483..524 | 138 | 81 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2688 | 483..567 | 137 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6866..6910 | 480..524 | 135 | 77.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1040..1122 | 445..523 | 134 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2386 | 483..523 | 133 | 80.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2395 | 483..523 | 133 | 80.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2404 | 483..523 | 133 | 80.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2428 | 483..523 | 133 | 80.5 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..8023 | 483..548 | 131 | 68.1 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9399..9467 | 483..548 | 131 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2528 | 483..559 | 128 | 64.9 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 984..1025 | 483..523 | 126 | 81 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1106..1146 | 483..523 | 124 | 78 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6838 | 470..524 | 122 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1508..1598 | 461..554 | 121 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1509..1580 | 443..512 | 121 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1586 | 482..512 | 119 | 87.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2419 | 483..523 | 115 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6885 | 461..523 | 114 | 66.7 | Plus |
TART-A | 13424 | TART-A 13424bp | 91..159 | 455..523 | 111 | 62.3 | Plus |
TART-A | 13424 | TART-A 13424bp | 11269..11337 | 455..523 | 111 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2372 | 485..551 | 110 | 62.7 | Plus |
UFO11336.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:09 Download gff for
UFO11336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11294-RA | 87..874 | 1..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:59 Download gff for
UFO11336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11294-RA | 87..874 | 1..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:13 Download gff for
UFO11336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11294-RA | 153..940 | 1..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:13 Download gff for
UFO11336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8692171..8692746 | 216..790 | 99 | <- | Minus |
X | 8693257..8693468 | 1..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:59 Download gff for
UFO11336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8586204..8586779 | 216..790 | 99 | <- | Minus |
arm_X | 8587290..8587501 | 1..215 | 98 | | Minus |